ArticleGenome biology2005
PubNet: a flexible system for visualizing literature derived networks.
Article in Genome biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
29 citing papers in PubMed, 1 synthesis or guideline pooled it.
- An analysis of the abstracts presented at the annual meetings of the Society for Neuroscience from 2001 to 2006.PloS one · 2008Pooled it
- PMIDigest: Interactive Review of Large Collections of PubMed Entries to Distill Relevant Information.Genes · 2023Article
- Text mining for identification of biological entities related to antibiotic resistant organisms.PeerJ · 2022Article
- PubTerm: a web tool for organizing, annotating and curating genes, diseases, molecules and other concepts from PubMed records.Database : the journal of biological databases and curation · 2019Article
- Creation of Individual Scientific Concept-Centered Semantic Maps Based on Automated Text-Mining Analysis of PubMed.Advances in bioinformatics · 2018Article
- Visualization of the IMIA Yearbook of Medical Informatics Publications over the Last 25 Years.Yearbook of medical informatics · 2016Article
- Mining biomedical images towards valuable information retrieval in biomedical and life sciences.Database : the journal of biological databases and curation · 2016Review
- PALM-IST: Pathway Assembly from Literature Mining--an Information Search Tool.Scientific reports · 2015Article
- MSL: Facilitating automatic and physical analysis of published scientific literature in PDF format.F1000Research · 2015Article
- PubMedMiner: Mining and Visualizing MeSH-based Associations in PubMed.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2014Article
- Accessing biomedical literature in the current information landscape.Methods in molecular biology (Clifton, N.J.) · 2014Review
- Network based elucidation of drug response: from modulators to targets.BMC systems biology · 2013Review
- Studying PubMed usages in the field for complex problem solving: Implications for tool design.Journal of the American Society for Information Science and Technology : JASIST · 2013Article
- Text-mining solutions for biomedical research: enabling integrative biology.Nature reviews. Genetics · 2012Review
- Informatics technology mimics ecology: dense, mutualistic collaboration networks are associated with higher publication rates.PloS one · 2012Article
- Ten simple rules for getting ahead as a computational biologist in Academia.PLoS computational biology · 2011Article
- SEACOIN--an investigative tool for biomedical informatics researchers.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2011Article
- PubMed and beyond: a survey of web tools for searching biomedical literature.Database : the journal of biological databases and curation · 2011Review
- Getting started in text mining: part two.PLoS computational biology · 2009Article
- Literature Mapping with PubAtlas - extending PubMed with a 'BLASTing interface'.Summit on translational bioinformatics · 2009Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
We have developed PubNet, a web-based tool that extracts several types of relationships returned by PubMed queries and maps them into networks, allowing for graphical visualization, textual navigation, and topological analysis. PubNet supports the creation of complex networks derived from the contents of individual citations, such as genes, proteins, Protein Data Bank (PDB) IDs, Medical Subject Headings (MeSH) terms, and authors. This feature allows one to, for example, examine a literature derived network of genes based on functional similarity.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.