ArticleGenome biology2005
E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns.
Article in Genome biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
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Who cites it
46 citing papers in PubMed.
- An Algorithm for the Selection of Probes for Specific Detection of Human Disease Pathogens Using the DNA Microarray Technology.Sovremennye tekhnologii v meditsine · 2022Article
- Bar-cas12a, a novel and rapid method for plant species authentication in case of Phyllanthus amarus Schumach. & Thonn.Scientific reports · 2021Article
- Screening for viral nucleic acids in vestibular schwannoma.Journal of neurovirology · 2018Article
- Development and Assessment of a Diagnostic DNA Oligonucleotide Microarray for Detection and Typing of Meningitis-Associated Bacterial Species.High-throughput · 2018Article
- A Novel Pan-BioMed research international · 2017Article
- DNA microarray for detection of gastrointestinal viruses.Journal of clinical microbiology · 2015Article
- PhyloFlu, a DNA microarray for determining the phylogenetic origin of influenza A virus gene segments and the genomic fingerprint of viral strains.Journal of clinical microbiology · 2014Article
- Microarray chip based identification of a mixed infection of bovine herpesvirus 1 and bovine viral diarrhea 2 from Indian cattle.Current microbiology · 2014Article
- Article
- Viral pathogen discovery.Current opinion in microbiology · 2013Review
- Pathogen chip for respiratory tract infections.Journal of clinical microbiology · 2013Article
- VIPR HMM: a hidden Markov model for detecting recombination with microbial detection microarrays.Bioinformatics (Oxford, England) · 2012Article
- Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics.PloS one · 2012Article
- In-depth investigation of archival and prospectively collected samples reveals no evidence for XMRV infection in prostate cancer.PloS one · 2012Article
- Virus identification in unknown tropical febrile illness cases using deep sequencing.PLoS neglected tropical diseases · 2012Article
- Metagenomics and the molecular identification of novel viruses.Veterinary journal (London, England : 1997) · 2011Review
- Microarrays for pathogen detection and analysis.Briefings in functional genomics · 2011Review
- Open-target sparse sensing of biological agents using DNA microarray.BMC bioinformatics · 2011Article
- Cross-species transmission of a novel adenovirus associated with a fulminant pneumonia outbreak in a new world monkey colony.PLoS pathogens · 2011Article
- Viral infection in acute exacerbation of idiopathic pulmonary fibrosis.American journal of respiratory and critical care medicine · 2011Article
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
DNA microarrays may be used to identify microbial species present in environmental and clinical samples. However, automated tools for reliable species identification based on observed microarray hybridization patterns are lacking. We present an algorithm, E-Predict, for microarray-based species identification. E-Predict compares observed hybridization patterns with theoretical energy profiles representing different species. We demonstrate the application of the algorithm to viral detection in a set of clinical samples and discuss its relevance to other metagenomic applications.
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