Evidence map›Paper›PMID 16166633›Full record

ArticleMolecular and cellular biology2005

Orphan nuclear receptor GCNF is required for the repression of pluripotency genes during retinoic acid-induced embryonic stem cell differentiation.

Peili Gu, Damien LeMenuet, Arthur C-K Chung, Michael Mancini, David A Wheeler, Austin J Cooney

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 186 citations in OpenAlex.

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  5. The expanding roles of Nr6a1 in development and evolution.Frontiers in cell and developmental biology · 2024
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  17. A Novel 13 bp Deletion within theAnimals : an open access journal from MDPI · 2019
    Article
  18. Review
  19. Article
  20. Nuclear receptors in neural stem/progenitor cell homeostasis.Cellular and molecular life sciences : CMLS · 2017
    Review

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Peili GuDepartment of Molecular and Cellular Biology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Damien LeMenuet
Arthur C-K Chung
Michael Mancini
David A Wheeler
Austin J Cooney
Baylor College of Medicine · US

Funding

TRANSGENIC MOUSE MODELS TO STUDY OVARIAN FUNCTIONU54HD007495 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI RICHARDS, JOANNE STEWART · 1998 to 2013
$19.9M
Analysis of Transcriptional Repression and SilencingR01DK073524 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI COONEY, AUSTIN JOHN · 2005 to 2007
$877k
NICHD NIH HHS U54 HD007495NICHD NIH HHS U54 HD07495NIDDK NIH HHS R01 DK073524NIDDK NIH HHS R01 DK73524
6 · The paper itself

Abstract

Embryonic stem (ES) cell pluripotency and differentiation are controlled by a network of transcription factors and signaling molecules. Transcription factors such as Oct4 and Nanog are required for self-renewal and maintain the undifferentiated state of ES cells. Decreases in the expression of these factors indicate the initiation of differentiation of ES cells. Inactivation of the gene encoding the orphan nuclear receptor GCNF showed that it plays an important role in the repression of Oct4 expression in somatic cells during early embryonic development. GCNF-/- ES cells were isolated to study the function of GCNF in the down-regulation of pluripotency genes during differentiation. Loss of repression of ES cell marker genes Oct4, Nanog, Sox2, FGF4, and Stella was observed upon treatment of GCNF-/- ES cells with retinoic acid. The loss of repression of pluripotency genes is either a direct or indirect consequence of loss of GCNF. Both the Oct4 and Nanog genes are direct targets of GCNF repression during ES cell differentiation and early mouse embryonic development. In contrast Sox2 and FGF4 are indirectly regulated by GCNF through Oct4. These findings establish a central role for GCNF in the repression of pluripotency gene expression during retinoic acid-induced ES cell differentiation.

Indexed as

AnimalsBlotting, NorthernBlotting, WesternCell DifferentiationCell LineCell NucleusChromatin ImmunoprecipitationDNA-Binding ProteinsDown-RegulationEmbryo, MammalianFemaleFibroblast Growth Factor 4GenotypeHomeodomain ProteinsIn Situ HybridizationMaleDNA-Binding ProteinsFGF4 protein, humanFibroblast Growth Factor 4Homeodomain ProteinsNanog Homeobox ProteinNanog protein, mouseNR6A1 protein, humanNr6a1 protein, mouseNuclear Receptor Subfamily 6, Group A, Member 1Octamer Transcription Factor-3Pou5f1 protein, mouseReceptors, Cytoplasmic and NuclearSox2 protein, mouseSOXB1 Transcription FactorsTrans-ActivatorsTretinoin

Identifiers

PMID16166633
PMCPMC1265758
OpenAlexW2149608498

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.