Evidence map›Paper›PMID 16160179›Full record

ArticleJournal of virology2005

Simian immunodeficiency virus infection in free-ranging sooty mangabeys (Cercocebus atys atys) from the Taï Forest, Côte d'Ivoire: implications for the origin of epidemic human immunodeficiency virus type 2.

Mario L Santiago, Friederike Range, Brandon F Keele, Yingying Li, Elizabeth Bailes, Frederic Bibollet-Ruche, Cecile Fruteau, Ronald Noë, Martine Peeters, John F Y Brookfield and 3 more

Erratum issuedAbstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 102 papers.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 309 citations in OpenAlex.

  1. Article
  2. Traditional ecological knowledge for great ape conservation in Gabon.Journal of ethnobiology and ethnomedicine · 2025
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Review
  20. Article

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Mario L SantiagoDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Friederike Range
Brandon F Keele
Yingying Li
Elizabeth Bailes
Frederic Bibollet-Ruche
Cecile Fruteau
Ronald Noë
Martine Peeters
John F Y Brookfield
George M Shaw
Paul M Sharp
Beatrice H Hahn
University of Alabama at Birmingham · USQueen's Medical Centre · GBCentre National de la Recherche Scientifique · FRUniversité de Montpellier · FRUniversity of Pennsylvania · US

Funding

Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI OLAF KUTSCH · 1988 to 2026
$84.1M
Natural SIV Reservoirs and Human Zoonotic RiskR01AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2001 to 2022
$6.1M
Molecular Epidemiology and Natural History of SIVcpzR01AI058715 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2004 to 2013
$6.1M
GENETIC VARIATION OG HIV AND RELATED LENTIVIRUSESN01AI085338 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI HAHN, BEATRICE H · 1998 to 2000
$680k
NIAID NIH HHS N01 AI085338NIAID NIH HHS N01 AI 85338NIAID NIH HHS P20 AI 27767NIAID NIH HHS P30 AI027767NIAID NIH HHS R01 AI050529NIAID NIH HHS R01 AI 058715NIAID NIH HHS R01 AI058715NIAID NIH HHS R01 AI 50529
6 · The paper itself

Abstract

Simian immunodeficiency virus of sooty mangabeys (SIVsmm) is recognized as the progenitor of human immunodeficiency virus type 2 (HIV-2) and has been transmitted to humans on multiple occasions, yet the epidemiology and genetic diversity of SIVsmm infection in wild-living populations remain largely unknown. Here, we report the first molecular epidemiological survey of SIVsmm in a community of approximately 120 free-ranging sooty mangabeys in the Taï Forest, Côte d'Ivoire. Fecal samples (n = 39) were collected from 35 habituated animals (27 females and 8 males) and tested for SIVsmm virion RNA (vRNA). Viral gag (800 bp) and/or env (490 bp) sequences were amplified from 11 different individuals (eight females and three males). Based on the sensitivity of fecal vRNA detection and the numbers of samples analyzed, the prevalence of SIVsmm infection was estimated to be 59% (95% confidence interval, 0.35 to 0.88). Behavioral data collected from this community indicated that SIVsmm infection occurred preferentially in high-ranking females. Phylogenetic analysis of gag and env sequences revealed an extraordinary degree of genetic diversity, including evidence for frequent recombination events in both the recent and distant past. Some sooty mangabeys harbored near-identical viruses (<2% interstrain distance), indicating epidemiologically linked infections. These transmissions were identified by microsatellite analyses to involve both related (mother/daughter) and unrelated individuals, thus providing evidence for vertical and horizontal transmission in the wild. Finally, evolutionary tree analyses revealed significant clustering of the Taï SIVsmm strains with five of the eight recognized groups of HIV-2, including the epidemic groups A and B, thus pointing to a likely geographic origin of these human infections in the eastern part of the sooty mangabey range.

Indexed as

AnimalsAnimals, WildCercocebus atysCote d'IvoireDisease Transmission, InfectiousFecesFemaleGenes, envGenes, gagGenetic VariationHIV-2HumansInfectious Disease Transmission, VerticalMaleMolecular EpidemiologyMolecular Sequence DataRNA, Viral

Identifiers

PMID16160179
PMCPMC1211554
OpenAlexW2167788081

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.