Evidence map›Paper›PMID 16160148›Full record

ArticleJournal of virology2005

Four-dimensional visualization of the simultaneous activity of alternative adeno-associated virus replication origins.

Daniel L Glauser, Okay Saydam, N Alexander Balsiger, Irma Heid, R Michael Linden, Mathias Ackermann, Cornel Fraefel

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Daniel L GlauserInstitute of Virology, University of Zurich, Winterthurerstrasse 266a, CH-8057 Zurich, Switzerland.
Okay Saydam
N Alexander Balsiger
Irma Heid
R Michael Linden
Mathias Ackermann
Cornel Fraefel
University of Zurich · CHIcahn School of Medicine at Mount Sinai · US

Funding

INTEGRATION OF AAV2 GENOME TO MUSCLE-SPECIFIC DNA REGIONR01GM062234 · NIGMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI LINDEN, RALPH MICHAEL · 2001 to 2005
$2.0M
NIGMS NIH HHS R01 GM062234NIGMS NIH HHS R01GM62234
6 · The paper itself

Abstract

The adeno-associated virus (AAV) inverted terminal repeats (ITRs) contain the AAV Rep protein-binding site (RBS) and the terminal resolution site (TRS), which together act as a minimal origin of DNA replication. The AAV p5 promoter also contains an RBS, which is involved in Rep-mediated regulation of promoter activity, as well as a functional TRS, and origin activity of these signals has in fact been demonstrated previously in the presence of adenovirus helper functions. Here, we show that in the presence of herpes simplex virus type 1 (HSV-1) and AAV Rep protein, p5 promoter-bearing plasmids are efficiently amplified to form large head-to-tail concatemers, which are readily packaged in HSV-1 virions if an HSV-1 DNA-packaging/cleavage signal is provided in cis. We also demonstrate simultaneous and independent replication from the two alternative AAV replication origins, p5 and ITR, on the single-cell level using multicolor-fluorescence live imaging, a finding which raises the possibility that both origins may contribute to the AAV life cycle. Furthermore, we assess the differential affinities of Rep for the two different replication origins, p5 and ITR, both in vitro and in live cells and identify this as a potential mechanism to control the replicative and promoter activities of p5.

Indexed as

AnimalsChlorocebus aethiopsDependovirusDNA PackagingDNA ReplicationGenes, ReporterHeLa CellsHerpesvirus 1, HumanHumansMicroscopy, ConfocalPlasmidsPromoter Regions, GeneticReplication OriginTerminal Repeat SequencesVero CellsViral ProteinsViral Proteins

Identifiers

PMID16160148
PMCPMC1211535
OpenAlexW2015362226

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.