Evidence map›Paper›PMID 16159875›Full record

ArticleThe Journal of biological chemistry2005

Bacterial cell killing mediated by topoisomerase I DNA cleavage activity.

Bokun Cheng, Shikha Shukla, Sarinnapha Vasunilashorn, Somshuvra Mukhopadhyay, Yuk-Ching Tse-Dinh

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 57 citations in OpenAlex.

  1. Review
  2. Interactions between Gepotidacin andACS infectious diseases · 2024
    Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Mechanism of Type IA Topoisomerases.Molecules (Basel, Switzerland) · 2020
    Review
  10. Article
  11. Small Molecule Condensin Inhibitors.ACS infectious diseases · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Bokun ChengDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, New York 10595, USA.
Shikha Shukla
Sarinnapha Vasunilashorn
Somshuvra Mukhopadhyay
Yuk-Ching Tse-Dinh
New York Medical College · US

Funding

Supplement for undergraduate research participant to promote diversityR01GM054226 · NIGMS · NEW YORK MEDICAL COLLEGE · PI TSE-DINH, YUK-CHING · 1996 to 2020
$4.6M
Development of a HTS system:topoisomerase targets (RMI)R03NS050782 · NINDS · NEW YORK MEDICAL COLLEGE · PI TSE-DINH, YUK-CHING · 2004 to 2004
$78k
NIGMS NIH HHS R01 GM054226NIGMS NIH HHS R01 GM54226NINDS NIH HHS R03 NS050782
6 · The paper itself

Abstract

DNA topoisomerases are important clinical targets for antibacterial and anticancer therapy. At least one type IA DNA topoisomerase can be found in every bacterium, making it a logical target for antibacterial agents that can convert the enzyme into poison by trapping its covalent complex with DNA. However, it has not been possible previously to observe the consequence of having such a stabilized covalent complex of bacterial topoisomerase I in vivo. We isolated a mutant of recombinant Yersinia pestis topoisomerase I that forms a stabilized covalent complex with DNA by screening for the ability to induce the SOS response in Escherichia coli. Overexpression of this mutant topoisomerase I resulted in bacterial cell death. From sequence analysis and site-directed mutagenesis, it was determined that a single amino acid substitution in the TOPRIM domain changing a strictly conserved glycine residue to serine in either the Y. pestis or E. coli topoisomerase I can result in a mutant enzyme that has the SOS-inducing and cell-killing properties. Analysis of the purified mutant enzymes showed that they have no relaxation activity but retain the ability to cleave DNA and form a covalent complex. These results demonstrate that perturbation of the active site region of bacterial topoisomerase I can result in stabilization of the covalent intermediate, with the in vivo consequence of bacterial cell death. Small molecules that induce similar perturbation in the enzyme-DNA complex should be candidates as leads for novel antibacterial agents.

Indexed as

Amino Acid MotifsAmino Acid SequenceAnti-Infective AgentsArabinoseBinding SitesCatalysisDNADNA Topoisomerases, Type IDose-Response Relationship, DrugElectrophoresis, Polyacrylamide GelEscherichia coliEtoposideMagnesiumModels, MolecularMolecular Sequence DataMutagenesisAnti-Infective AgentsArabinoseDNADNA Topoisomerases, Type IEtoposideMagnesiumRecombinant ProteinsTryptophan

Identifiers

PMID16159875
PMCPMC1351368
OpenAlexW2081591195

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.