Evidence map›Paper›PMID 16159784›Full record

ArticleJournal of bacteriology2005

The pCoo plasmid of enterotoxigenic Escherichia coli is a mosaic cointegrate.

Barbara Froehlich, Julian Parkhill, Mandy Sanders, Michael A Quail, June R Scott

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
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  4. Review
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  7. Review
  8. Pathogens (Basel, Switzerland) · 2020
    Article
  9. Article
  10. Article
  11. Frontiers in microbiology · 2020
    Article
  12. Article
  13. Review
  14. Article
  15. Molecular and Phenotypic Characterization of DiarrheagenicThe American journal of tropical medicine and hygiene · 2017
    Article
  16. Article
  17. Article
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Barbara FroehlichDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, Georgia 30322, USA.
Julian Parkhill
Mandy Sanders
Michael A Quail
June R Scott
Wellcome Sanger Institute · GBEmory University · US

Funding

REGULATION OF EXPRESSION OF ADHERENCE FACTORSR01AI024870 · NIAID · EMORY UNIVERSITY · PI SCOTT, JUNE R · 1988 to 2005
$2.8M
NIAID NIH HHS AI24870NIAID NIH HHS R01 AI024870Wellcome Trust
6 · The paper itself

Abstract

CS1 is the prototype of a class of pili of enterotoxigenic Escherichia coli (ETEC) associated with diarrheal disease in humans. The genes encoding this pilus are carried on a large plasmid, pCoo. We report the sequence of the complete 98,396-bp plasmid. Like many other virulence plasmids, pCoo is a mosaic consisting of regions derived from multiple sources. Complete and fragmented insertion sequences (IS) make up 24% of the total DNA and are scattered throughout the plasmid. The pCoo DNA between these IS elements has a wide range of G+C content (35 to 57%), suggesting that these regions have different ancestries. We find that the pCoo plasmid is a cointegrate of two functional replicons, related to R64 and R100, which are joined at a 1,953-bp direct repeat of IS100. Recombination between these repeats in the cointegrate generates the two smaller replicons which coexist with the cointegrate in the culture. Both of the smaller replicons have plasmid stability genes as well as genes that may be important in pathogenesis. Examination by PCR of 17 other unrelated CS1 ETEC strains with a variety of serotypes demonstrated that all contained at least parts of both replicons of pCoo and that strains of the O6 genotype appear to contain a cointegrate very similar to pCoo. The results suggest that this family of CS1-encoding plasmids is evolving rapidly.

Indexed as

DNA, BacterialEnterotoxinsEscherichia coliFimbriae ProteinsGene Transfer, HorizontalPlasmidsRecombination, GeneticReplication OriginRepliconDNA, BacterialEnterotoxinsFimbriae Proteins

Identifiers

PMID16159784
PMCPMC1236633
OpenAlexW2157834936

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.