Evidence map›Paper›PMID 16157873›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Vitamin B6 biosynthesis in higher plants.

Marina Tambasco-Studart, Olca Titiz, Thomas Raschle, Gabriela Forster, Nikolaus Amrhein, Teresa B Fitzpatrick

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 242 citations in OpenAlex.

  1. Article
  2. Article
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  5. Physiological and Molecular Response Mechanisms ofInternational journal of molecular sciences · 2026
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  8. Article
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  11. Functional analysis ofFrontiers in plant science · 2025
    Article
  12. Article
  13. Association between vitamin BFrontiers in pediatrics · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Marina Tambasco-StudartInstitute of Plant Sciences, Swiss Federal Institute of Technology (ETH), Universitätstrasse 2, CH-8092 Zürich, Switzerland.
Olca Titiz
Thomas Raschle
Gabriela Forster
Nikolaus Amrhein
Teresa B Fitzpatrick
École Polytechnique Fédérale de Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vitamin B6 is an essential metabolite in all organisms. It can act as a coenzyme for numerous metabolic enzymes and has recently been shown to be a potent antioxidant. Plants and microorganisms have a de novo biosynthetic pathway for vitamin B6, but animals must obtain it from dietary sources. In Escherichia coli, it is known that the vitamin is derived from deoxyxylulose 5-phosphate (an intermediate in the nonmevalonate pathway of isoprenoid biosynthesis) and 4-phosphohydroxy-l-threonine. It has been assumed that vitamin B6 is synthesized in the same way in plants, but this hypothesis has never been experimentally proven. Here, we show that, in plants, synthesis of the vitamin takes an entirely different route, which does not involve deoxyxylulose 5-phosphate but instead utilizes intermediates from the pentose phosphate pathway, i.e., ribose 5-phosphate or ribulose 5-phosphate, and from glycolysis, i.e., dihydroxyacetone phosphate or glyceraldehyde 3-phosphate. The revelation is based on the recent discovery that, in bacteria and fungi, a novel pathway is in place that involves two genes (PDX1 and PDX2), neither of which is homologous to any of those involved in the previously doctrined E. coli pathway. We demonstrate that Arabidopsis thaliana has two functional homologs of PDX1 and a single homolog of PDX2. Furthermore, and contrary to what was inferred previously, we show that the pathway appears to be cytosolic and is not localized to the plastid. Last, we report that the single PDX2 homolog is essential for plant viability.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsCarbon-Nitrogen LyasesCytoplasmEscherichia coliEscherichia coli ProteinsFungal ProteinsFungiGlycolysisMolecular Sequence DataNitrogenous Group TransferasesPentose Phosphate PathwayPentosephosphatesVitamin B 6Arabidopsis ProteinsAt2g38230 protein, ArabidopsisCarbon-Nitrogen LyasesEscherichia coli ProteinsFungal ProteinsNitrogenous Group TransferasesPDX2 protein, ArabidopsisPentosephosphatesVitamin B 6

Identifiers

PMID16157873
PMCPMC1224648
OpenAlexW2163027365

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.