ArticleGenetics2005
Nucleotide diversity and linkage disequilibrium in cold-hardiness- and wood quality-related candidate genes in Douglas fir.
Article in Genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.
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Who cites it
53 citing papers in PubMed.
- Genomic insights into the improvement of Chinese fir from ancient domestication continuum to modern breeding.Nature communications · 2026Article
- Phylogenetic Reassessment of Murinae Inferred from the Mitogenome of the Monotypic GenusBiology · 2025Article
- Study on the Genetic Diversity Characteristics of the Endemic PlantEcology and evolution · 2025Article
- Transcriptome data analysis provides insights into the conservation of Michelia lacei, a plant species with extremely small populations distributed in Yunnan province, China.BMC plant biology · 2024Article
- Article
- Genotyping SNPs in lignin biosynthesis gene (CAD1) and transcription factors (MYB1 and MYB2) exhibits association with wood density in teak (Tectona grandis L.f.).Molecular biology reports · 2024Article
- Conservation genetics and potential geographic distribution modeling of Corybas taliensis, a small 'sky Island' orchid species in China.BMC plant biology · 2024Article
- The western redcedar genome reveals low genetic diversity in a self-compatible conifer.Genome research · 2022Article
- Article
- Comparative Genomics Analysis of Repetitive Elements in Ten Gymnosperm Species: "Dark Repeatome" and Its Abundance in Conifer andLife (Basel, Switzerland) · 2021Article
- Toward the identification of molecular markers associated with phytochemical traits in the Iranian sumac (Food science & nutrition · 2021Article
- Development of EST-SSR markers and association mapping with floral traits in Syringa oblata.BMC plant biology · 2020Article
- An Axiom SNP genotyping array for Douglas-fir.BMC genomics · 2020Article
- Association Study of the 5'UTR Intron of theFrontiers in plant science · 2020Article
- Exploring the genetic basis of gene transcript abundance and metabolite levels in loblolly pine (Pinus taeda L.) using association mapping and network construction.BMC genetics · 2018Article
- Single-nucleotide polymorphisms(SNPs) in a sucrose synthase gene are associated with wood properties in Catalpa fargesii bur.BMC genetics · 2018Article
- Linkage Disequilibrium and Population Structure in Wild and Cultivated Populations of Rubber Tree (Frontiers in plant science · 2018Article
- Expected benefit of genomic selection over forward selection in conifer breeding and deployment.PloS one · 2018Article
- Variation in short-term and long-term responses of photosynthesis and isoprenoid-mediated photoprotection to soil water availability in four Douglas-fir provenances.Scientific reports · 2017Article
- Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.).BMC genomics · 2016Article
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2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Nuclear sequence variation and linkage disequilibrium (LD) were studied in 15 cold-hardiness- and 3 wood quality-related candidate genes in Douglas fir [Pseudotsuga menziesii (Mirb.) Franco]. This set of genes was selected on the basis of its function in other plants and collocation with cold-hardiness-related quantitative trait loci (QTL). The single-nucleotide polymorphism (SNP) discovery panel represented 24 different trees from six regions in Washington and Oregon plus parents of a segregating population used in the QTL study. The frequency of SNPs was one SNP per 46 bp across coding and noncoding regions on average. Haplotype and nucleotide diversities were also moderately high with H(d) = 0.827 +/- 0.043 and pi = 0.00655 +/- 0.00082 on average, respectively. The nonsynonymous (replacement) nucleotide substitutions were almost five times less frequent than synonymous ones and substitutions in noncoding regions. LD decayed relatively slowly but steadily within genes. Haploblock analysis was used to define haplotype tag SNPs (htSNPs). These data will help to select SNPs for association mapping, which is already in progress.
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