Evidence map›Paper›PMID 16155178›Full record

ArticleThe Plant cell2005

SUPPRESSOR OF FRIGIDA3 encodes a nuclear ACTIN-RELATED PROTEIN6 required for floral repression in Arabidopsis.

Kyuha Choi, Sanghee Kim, Sang Yeol Kim, Minsoo Kim, Youbong Hyun, Horim Lee, Sunghwa Choe, Sang-Gu Kim, Scott Michaels, Ilha Lee

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
11.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it, 125 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. PIF transcription factors-versatile plant epigenome landscapers.Frontiers in epigenetics and epigenomics · 2024
    Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Biomolecules · 2021
    Article
  13. Article
  14. Article
  15. Transcriptome and epigenome analyses of vernalization in Arabidopsis thaliana.The Plant journal : for cell and molecular biology · 2020
    Article
  16. Article
  17. H2A Variants inPlant communications · 2020
    Review
  18. Review
  19. Review
  20. Roles of the INO80 and SWR1 Chromatin Remodeling Complexes in Plants.International journal of molecular sciences · 2019
    Review

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Kyuha ChoiDepartment of Biological Sciences, Seoul National University, Seoul 151-742, Korea.
Sanghee Kim
Sang Yeol Kim
Minsoo Kim
Youbong Hyun
Horim Lee
Sunghwa Choe
Sang-Gu Kim
Scott Michaels
Ilha Lee
Seoul National University · KRIndiana University Bloomington · USKyung Hee University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Flowering traits in winter annual Arabidopsis thaliana are conferred mainly by two genes, FRIGIDA (FRI) and FLOWERING LOCUS C (FLC). FLC acts as a flowering repressor and is regulated by multiple flowering pathways. We isolated an early-flowering mutant, suppressor of FRIGIDA3 (suf3), which also shows leaf serration, weak apical dominance, and infrequent conversion of the inflorescence shoot to a terminal flower. The suf3 mutation caused a decrease in the transcript level of FLC in both a FRI-containing line and autonomous pathway mutants. However, suf3 showed only a partial reduction of FLC transcript level, although it largely suppressed the late-flowering phenotype. In addition, the suf3 mutation caused acceleration of flowering in both 35S-FLC and a flc null mutant, indicating that SUF3 regulates additional factor(s) for the repression of flowering. SUF3 is highly expressed in the shoot apex, but the expression is not regulated by FRI, autonomous pathway genes, or vernalization. SUF3 encodes the nuclear ACTIN-RELATED PROTEIN6 (ARP6), the homolog of which in yeast is a component of an ATP-dependent chromatin-remodeling SWR1 complex. Our analyses showed that SUF3 regulates FLC expression independent of vernalization, FRI, and an autonomous pathway gene, all of which affect the histone modification of FLC chromatin. Subcellular localization using a green fluorescent protein fusion showed that Arabidopsis ARP6 is located at distinct regions of the nuclear periphery.

Indexed as

ActinsAmino Acid SequenceArabidopsisArabidopsis ProteinsChromatinDown-RegulationFlowersGene Expression Regulation, PlantHistonesMADS Domain ProteinsMicrofilament ProteinsMolecular Sequence DataMutationNuclear ProteinsPlant Growth RegulatorsRegulatory Elements, TranscriptionalActinsArabidopsis ProteinsARP6 protein, ArabidopsisArp6 protein, S pombeAt5g10140 protein, ArabidopsisChromatinFRI protein, ArabidopsisHistonesMADS Domain ProteinsMicrofilament ProteinsNuclear ProteinsPlant Growth RegulatorsSchizosaccharomyces pombe Proteins

Identifiers

PMID16155178
PMCPMC1242263
OpenAlexW2128570796

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.