Evidence map›Paper›PMID 16154092›Full record

ArticleStructure (London, England : 1993)2005

Mechanism of activation for transcription factor PhoB suggested by different modes of dimerization in the inactive and active states.

Priti Bachhawat, G V T Swapna, Gaetano T Montelione, Ann M Stock

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 141 citations in OpenAlex.

  1. Article
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  10. Chemical Reaction Models in Synthetic Promoter Design in Bacteria.Methods in molecular biology (Clifton, N.J.) · 2024
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  12. Structure of phosphorylated-like RssB, the adaptor delivering σThe Journal of biological chemistry · 2023
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  18. Article
  19. Coordination of Phosphate and Magnesium Metabolism in Bacteria.Advances in experimental medicine and biology · 2022
    Article
  20. Article

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Priti BachhawatCenter for Advanced Biotechnology and Medicine, Piscataway, NJ 08854, USA.
G V T Swapna
Gaetano T Montelione
Ann M Stock
Rutgers, The State University of New Jersey · USHoward Hughes Medical Institute · US

Funding

STRUCTURAL GENOMICS OF EUKARYOTIC MODEL ORGANISMSP50GM062413 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI MONTELIONE, GAETANO T · 2000 to 2004
$33.5M
Structure and Function of Response Regulator ProteinsR37GM047958 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI STOCK, ANN M. · 2003 to 2013
$3.4M
Howard Hughes Medical InstituteNIGMS NIH HHS P50 GM062413NIGMS NIH HHS R37 GM047958NIGMS NIH HHS R37GM047958
6 · The paper itself

Abstract

Response regulators (RRs), which undergo phosphorylation/dephosphorylation at aspartate residues, are highly prevalent in bacterial signal transduction. RRs typically contain an N-terminal receiver domain that regulates the activities of a C-terminal DNA binding domain in a phosphorylation-dependent manner. We present crystallography and solution NMR data for the receiver domain of Escherichia coli PhoB which show distinct 2-fold symmetric dimers in the inactive and active states. These structures, together with the previously determined structure of the C-terminal domain of PhoB bound to DNA, define the conformation of the active transcription factor and provide a model for the mechanism of activation in the OmpR/PhoB subfamily, the largest group of RRs. In the active state, the receiver domains dimerize with 2-fold rotational symmetry using their alpha4-beta5-alpha5 faces, while the effector domains bind to DNA direct repeats with tandem symmetry, implying a loss of intramolecular interactions.

Indexed as

Bacterial ProteinsBinding SitesCrystallographyDimerizationEscherichia coli ProteinsPhosphorylationProtein Structure, SecondarySolutionsTranscription FactorsBacterial ProteinsEscherichia coli ProteinsPhoB protein, BacteriaSolutionsTranscription Factors

Identifiers

PMID16154092
PMCPMC3685586
OpenAlexW2057460911

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.