Evidence map›Paper›PMID 16153672›Full record

ArticleVirology2005

Structure of avian orthoreovirus virion by electron cryomicroscopy and image reconstruction.

Xing Zhang, Jinghua Tang, Stephen B Walker, David O'Hara, Max L Nibert, Roy Duncan, Timothy S Baker

Open access · greenAbstract read
In one paragraph

Article in Virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. In situ structures of polymerase complex of mammalian reovirus illuminate RdRp activation and transcription regulation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Viral Capsid and Polymerase in Reoviridae.Sub-cellular biochemistry · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Outbreak-associated novel duck Reovirus, China, 2011.Emerging infectious diseases · 2012
    Article
  20. Cryo-EM structure of a transcribing cypovirus.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Xing ZhangDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.
Jinghua Tang
Stephen B Walker
David O'Hara
Max L Nibert
Roy Duncan
Timothy S Baker
Purdue University West Lafayette · USDalhousie University · CAHarvard University · USUniversity of California San Diego · US

Funding

VIRUS ASSEMBLY AND TRANSMISSIONP01AI045976 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI ROSSMANN, MICHAEL G · 1999 to 2008
$8.8M
Microscopy &Image Analysis of Unstained MacromoleculesR37GM033050 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BAKER, TIMOTHY S · 2004 to 2013
$5.6M
BIOPHYS STUD OF PROTEINS, NUCLEIC ACIDS, AND VIRUSEST32GM008296 · NIGMS · PURDUE UNIVERSITY WEST LAFAYETTE · PI STAUFFACHER, CYNTHIA VIANNE · 1989 to 2012
$2.2M
Molecular Mechanisms in Reovirus mRNA SynthesisR01AI047904 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI NIBERT, MAX L. · 2002 to 2006
$1.7M
REOVIRUS OUTER-CAPSID ASSEMBLY &FUNCTIONS IN CELL ENTRYR01AI046440 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI NIBERT, MAX L. · 2001 to 2005
$1.7M
NIAID NIH HHS P01 AI045976NIAID NIH HHS R01 AI046440NIAID NIH HHS R01 AI047904NIAID NIH HHS R01 AI46440NIAID NIH HHS R01 AI47904NIGMS NIH HHS R37 GM033050NIGMS NIH HHS R37 GM33050NIGMS NIH HHS T32 GM008296NIGMS NIH HHS T32 GM08296
6 · The paper itself

Abstract

Among members of the genus Orthoreovirus, family Reoviridae, a group of non-enveloped viruses with genomes comprising ten segments of double-stranded RNA, only the "non-fusogenic" mammalian orthoreoviruses (MRVs) have been studied to date by electron cryomicroscopy and three-dimensional image reconstruction. In addition to MRVs, this genus comprises other species that induce syncytium formation in cultured cells, a property shared with members of the related genus Aquareovirus. To augment studies of these "fusogenic" orthoreoviruses, we used electron cryomicroscopy and image reconstruction to analyze the virions of a fusogenic avian orthoreovirus (ARV). The structure of the ARV virion, determined from data at an effective resolution of 14.6 A, showed strong similarities to that of MRVs. Of particular note, the ARV virion has its pentameric lambda-class core turret protein in a closed conformation as in MRVs, not in a more open conformation as reported for aquareovirus. Similarly, the ARV virion contains 150 copies of its monomeric sigma-class core-nodule protein as in MRVs, not 120 copies as reported for aquareovirus. On the other hand, unlike that of MRVs, the ARV virion lacks "hub-and-spokes" complexes within the solvent channels at sites of local sixfold symmetry in the incomplete T=13l outer capsid. In MRVs, these complexes are formed by C-terminal sequences in the trimeric mu-class outer-capsid protein, sequences that are genetically missing from the homologous protein of ARVs. The channel structures and C-terminal sequences of the homologous outer-capsid protein are also genetically missing from aquareoviruses. Overall, the results place ARVs between MRVs and aquareoviruses with respect to the highlighted features.

Indexed as

Amino Acid SequenceCapsidCryoelectron MicroscopyImage Processing, Computer-AssistedModels, MolecularMolecular Sequence DataOrthoreovirus, AvianOrthoreovirus, MammalianProtein ConformationReoviridaeViral ProteinsViral Proteins

Identifiers

PMID16153672
PMCPMC4152769
OpenAlexW2134082339

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.