Evidence map›Paper›PMID 16153184›Full record

ArticleThe Biochemical journal2006

The structural roles of a conserved small hydrophobic core in the active site and an ionic bridge in domain I of Delta class glutathione S-transferase.

Ardcharaporn Vararattanavech, Peerada Prommeenate, Albert J Ketterman

Open access · bronzeAbstract read
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Article in The Biochemical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Ardcharaporn VararattanavechInstitute of Molecular Biology and Genetics, Mahidol University, Salaya campus, 25/25 Putthamonthol Road 4, Salaya, Nakhon Pathom, 73170 Thailand.
Peerada Prommeenate
Albert J Ketterman
Mahidol University · THNational Center for Genetic Engineering and Biotechnology · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

GSTs (glutathione S-transferases; E.C.2.5.1.18) are a supergene family of dimeric multifunctional enzymes that have a major role in detoxification pathways. Using a GST from the mosquito Anopheles dirus (adGSTD4-4), we have characterized the enzymatic and physical properties of Leu-6, Thr-31, Leu-33, Ala-35, Glu-37, Lys-40 and Glu-42. These residues generate two motifs located in the N-terminal domain (domain I) that are functionally conserved across GST classes. The aim of this study was to understand the function of these two motifs. The first motif is a small hydrophobic core in the G-site (glutathione-binding site) wall, and the second motif contains an ionic bridge at the N-terminus of the alpha2 helix and is also part of the G-site. The mutations in the small hydrophobic core appear to have structural effects, as shown by the thermal stability, refolding rate and intrinsic fluorescence differences. In the Delta class GST, interactions form an ionic bridge motif located at the beginning of the alpha2 helix. The data suggest that electrostatic interactions in the alpha2 helix are involved in alpha-helix stabilization, and disruption of this ionic bridge interaction changes the movement of the alpha2-helix region, thereby modulating the interaction of the enzyme with substrates. These results show that the small hydrophobic core and ionic bridge have a major impact on structural stabilization, as well as being required to maintain structural conformation of the enzyme. These structural effects are also transmitted to the active site to influence substrate binding and specificity. Therefore changes in the conformation of the G-site wall in the active site appear to be capable of exerting influences on the tertiary structural organization of the whole GST protein.

Indexed as

Conserved SequenceAmino Acid SequenceAnimalsAnophelesBinding SitesEnzyme StabilityGene Expression Regulation, EnzymologicGlutathione TransferaseHot TemperatureHydrophobic and Hydrophilic InteractionsKineticsModels, MolecularMutationProtein FoldingProtein Structure, TertiaryStatic ElectricityGlutathione Transferase

Identifiers

PMID16153184
PMCPMC1383667
OpenAlexW2069634795

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.