Evidence map›Paper›PMID 16150476›Full record

ArticleVirology2005

An activation domain within the walleye dermal sarcoma virus retroviral cyclin protein is essential for inhibition of the viral promoter.

Joel Rovnak, Brett W Hronek, Sean O Ryan, Sumin Cai, Sandra L Quackenbush

Open access · greenAbstract read
In one paragraph

Article in Virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

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  10. Aquatic animal models of human disease.Comparative biochemistry and physiology. Toxicology & pharmacology : CBP · 2007
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Joel RovnakDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045, USA.
Brett W Hronek
Sean O Ryan
Sumin Cai
Sandra L Quackenbush
University of Kansas · US

Funding

Walleye Dermal Sarcooma Virus Accessory Protein FunctionR01CA095056 · NCI · UNIVERSITY OF KANSAS LAWRENCE · PI QUACKENBUSH, SANDRA L · 2002 to 2012
$2.2M
NCI NIH HHS R01 CA095056
6 · The paper itself

Abstract

Walleye dermal sarcoma virus (WDSV) is a complex retrovirus associated with seasonal dermal sarcomas. Developing tumors have low levels of accessory gene transcripts, A1 and B, and regressing tumors have high levels of full-length and spliced transcripts. Transcript A1 encodes a retroviral cyclin (rv-cyclin) with limited homology to host cyclins. The rv-cyclin is physically linked to components of the transcriptional co-activator complex, Mediator, and regulates transcription. In walleye fibroblasts, it inhibits the WDSV promoter independently of cis-acting DNA sequences. The rv-cyclin activates transcription from GAL4 promoters when fused to the GAL4 DNA binding domain. A 30 a.a. activation domain in the carboxy region can be inactivated by single point mutations, and these mutations diminish the ability of the rv-cyclin to inhibit the WDSV promoter. When fused to glutathione S-transferase, the rv-cyclin, its carboxy region, and the activation domain pull down components of transcription complexes from nuclear extracts, and pull down is lost by mutation of the activation domain.

Indexed as

Amino Acid SequenceDown-RegulationEpsilonretrovirusMolecular Sequence DataPromoter Regions, GeneticProtein Structure, TertiaryRetroviridae ProteinsSequence AlignmentTranscriptional ActivationTranscription FactorsRetroviridae ProteinsTranscription Factors

Identifiers

PMID16150476
PMCPMC3364292
OpenAlexW1977866485

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.