Evidence map›Paper›PMID 16145124›Full record

ArticleJournal of clinical microbiology2005

Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex.

Adam Baldwin, Eshwar Mahenthiralingam, Kathleen M Thickett, David Honeybourne, Martin C J Maiden, John R Govan, David P Speert, John J Lipuma, Peter Vandamme, Chris G Dowson

Abstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed.

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  17. Antibiotics (Basel, Switzerland) · 2021
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35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Adam BaldwinDepartment of Biological Sciences, University of Warwick, Coventry, UK.
Eshwar Mahenthiralingam
Kathleen M Thickett
David Honeybourne
Martin C J Maiden
John R Govan
David P Speert
John J Lipuma
Peter Vandamme
Chris G Dowson

Funding

Wellcome Trust
6 · The paper itself

Abstract

A single multilocus sequence typing (MLST) scheme was developed for precise characterization of the opportunistic pathogens of Burkholderia cepacia complex (BCC), a group composed of at least nine closely related species. Seven conserved housekeeping genes were selected after a comparison of five Burkholderia species, and a collection of strains was subjected to nucleotide sequence analysis using a nested PCR amplification approach for each gene. MLST differentiated all nine current BCC species and identified 114 sequence types within a collection of 119 strains. No differentiation was found between strains recovered from environmental or clinical sources. The improved resolution in strain identification offered by MLST was able to identify previously characterized epidemic strain lineages and also demonstrated the presence of four novel potential species groups within the complex. There was also evidence for recombination having an important role in the recent evolution of individual BCC species. This highly transferable, validated, MLST scheme provides a new means to assist in species identification as well as unambiguous strain discrimination of the BCC by a single approach. It is also the first MLST scheme designed at the outset to incorporate multiple species and should facilitate global epidemiological investigations of the BCC.

Indexed as

Bacterial Typing TechniquesSequence Analysis, DNAAllelesBacterial ProteinsBase SequenceBurkholderia cepacia complexDNA, BacterialGenetic VariationHumansPhylogenyPolymerase Chain ReactionRecombination, GeneticSpecies SpecificityBacterial ProteinsDNA, Bacterial

Identifiers

PMID16145124
PMCPMC1234123

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.