Evidence map›Paper›PMID 16144413›Full record

ArticleJournal of the American Chemical Society2005

The octarepeat domain of the prion protein binds Cu(II) with three distinct coordination modes at pH 7.4.

Madhuri Chattopadhyay, Eric D Walter, Dustin J Newell, Pilgrim J Jackson, Eliah Aronoff-Spencer, Jack Peisach, Gary J Gerfen, Brian Bennett, William E Antholine, Glenn L Millhauser

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed.

  1. Review
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  11. Review
  12. Aggregates Sealed by Ions.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  13. EPR of copper centers in the prion protein.Methods in enzymology · 2022
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Intrinsic toxicity of the cellular prion protein is regulated by its conserved central region.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  20. Review

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Madhuri ChattopadhyayDepartment of Chemistry & Biochemistry, University of California, Santa Cruz, California 95064, USA.
Eric D Walter
Dustin J Newell
Pilgrim J Jackson
Eliah Aronoff-Spencer
Jack Peisach
Gary J Gerfen
Brian Bennett
William E Antholine
Glenn L Millhauser

Funding

Molecular Aspects of Copper Binding to the Prion ProteinR01GM065790 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI MILLHAUSER, GLENN L · 2002 to 2018
$4.5M
HEME PROTEIN STRUCTURE AND FUNCTIONR01GM040168 · NIGMS · YESHIVA UNIVERSITY · PI PEISACH, JACK · 2001 to 2004
$1.7M
ADVANCED EPR STUDIES OF B12 DEPENDENT ENZYMESR01GM060609 · NIGMS · YESHIVA UNIVERSITY · PI GERFEN, GARY J. · 2000 to 2005
$1.0M
HEME PROTEIN STRUCTURE AND FUNCTIONR37GM040168 · NIGMS · YESHIVA UNIVERSITY · PI PEISACH, JACK · 1988 to 1997
–
NIGMS NIH HHS GM 40168NIGMS NIH HHS GM 60609NIGMS NIH HHS GM 65790NIGMS NIH HHS R01 GM040168NIGMS NIH HHS R01 GM060609NIGMS NIH HHS R01 GM065790NIGMS NIH HHS R37 GM040168
6 · The paper itself

Abstract

The prion protein (PrP) binds Cu2+ in its N-terminal octarepeat domain. This unusual domain is comprised of four or more tandem repeats of the fundamental sequence PHGGGWGQ. Previous work from our laboratories demonstrates that at full copper occupancy, each HGGGW segment binds a single Cu2+. However, several recent studies suggest that low copper occupancy favors different coordination modes, possibly involving imidazoles from histidines in adjacent octapeptide segments. This is investigated here using a combination of X-band EPR, S-band EPR, and ESEEM, along with a library of modified peptides designed to favor different coordination interactions. At pH 7.4, three distinct coordination modes are identified. Each mode is fully characterized to reveal a series of copper-dependent octarepeat domain structures. Multiple His coordination is clearly identified at low copper stoichiometry. In addition, EPR detected copper-copper interactions at full occupancy suggest that the octarepeat domain partially collapses, perhaps stabilizing this specific binding mode and facilitating cooperative copper uptake. This work provides the first complete characterization of all dominant copper coordination modes at pH 7.4.

Indexed as

CopperHydrogen-Ion ConcentrationOrganometallic CompoundsPeptide FragmentsPrionsProtein ConformationProtein Structure, TertiaryRepetitive Sequences, Amino AcidCopperOrganometallic CompoundsPeptide FragmentsPrions

Identifiers

PMID16144413
PMCPMC2909831

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.