Evidence map›Paper›PMID 16142466›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2005

Development of a molecular marker specific to a novel CMS line in radish (Raphanus sativus L.).

Seok-Hyeon Nahm, Hee-Jeong Lee, Shi-Woo Lee, Gyun-Young Joo, Chee-Hark Harn, Seung-Gyun Yang, Byung-Whan Min

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. An insertion mutation located on putative enhancer regions of theMolecular breeding : new strategies in plant improvement · 2021
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  14. Discovery of a novel cytoplasmic male-sterility and its restorer lines in radish (Raphanus sativus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008
    Article
  15. A new fertility restorer locus linked closely to the Rfo locus for cytoplasmic male sterility in radish.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008
    Article
  16. Genetic characterization of a new cytoplasmic male sterility system (hau) in Brassica juncea and its transfer to B. napus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Seok-Hyeon NahmBiotechnology Institute, Nong Woo Bio Co., Yeoju, Gyeonggi, South Korea. shnahm1@nongwoobio.co.kr
Hee-Jeong Lee
Shi-Woo Lee
Gyun-Young Joo
Chee-Hark Harn
Seung-Gyun Yang
Byung-Whan Min
Nongwoo Bio (South Korea) · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we have investigated the cytoplasmic male sterility (CMS) of a novel male sterile radish line, designated NWB CMS. The NWB CMS was crossed with 16 fertile breeding lines, and all the progenies were completely male sterile. The degree of male sterility exhibited by NWB CMS is more than Ogura CMS from the Cruciferae family. The NWB CMS was found to induce 100% male sterility when crossed with all the tested breeding lines, whereas the Ogura CMS did not induce male sterility with any of the breeding lines. PCR analysis revealed that the molecular factor that influenced Ogura CMS, the orf138 gene, was absent in the NWB CMS line, and that the orf138 gene was not also expressed in this CMS line. In order to identify the cytoplasmic factors that confer male sterility in the NWB CMS line, we carried out RFLP analyses with 32 mitochondrial genes, all of which were used as probes. Fourteen genes exhibited polymorphisms between the NWB CMS line and other radish cultivars. Based on these RFLP data, intergenic primers were developed in order to amplify the intergenic regions between the polymorphic genes. Among these, a primer pair at the 3' region of the atp6 gene (5'-cgcttggactatgctatgtatga-3') and the 5' region of the nad3 gene (5'-tcatagagaaatccaatcgtcaa-3') produced a 2 kbp DNA fragment as a result of PCR. This DNA fragment was found to be specific to NWB CMS and was not present in other CMS types. It appears that this fragment could be used as a DNA marker to select NWB CMS line in a radish-breeding program.

Indexed as

Blotting, NorthernBreedingCrosses, GeneticDNA, MitochondrialDNA PrimersGenes, PlantGenetic MarkersPolymerase Chain ReactionPolymorphism, Restriction Fragment LengthRaphanusReproductionSpecies SpecificityDNA, MitochondrialDNA PrimersGenetic Markers

Identifiers

PMID16142466
OpenAlexW1989606792

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.