Evidence map›Paper›PMID 16141317›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Crystal structure of the GTPase domain of rat dynamin 1.

Thomas F Reubold, Susanne Eschenburg, Andreas Becker, Marilyn Leonard, Sandra L Schmid, Richard B Vallee, F Jon Kull, Dietmar J Manstein

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Review
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  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Deformable elastic network refinement for low-resolution macromolecular crystallography.Acta crystallographica. Section D, Biological crystallography · 2014
    Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Mechanics of dynamin-mediated membrane fission.Annual review of biophysics · 2013
    Review
  17. Dynamin and PTP-PEST cooperatively regulate Pyk2 dephosphorylation in osteoclasts.The international journal of biochemistry & cell biology · 2012
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Thomas F ReuboldAbteilung Biophysik, Max-Planck-Institut für Medizinische Forschung, Jahnstrasse 29, D-69120 Heidelberg, Germany.
Susanne Eschenburg
Andreas Becker
Marilyn Leonard
Sandra L Schmid
Richard B Vallee
F Jon Kull
Dietmar J Manstein
Max Planck Institute for Medical Research · DE

Funding

MOLECULAR GENETICS OF CYTOPLASMIC DYNEINR37GM047434 · NIGMS · WORCESTER FOUNDATION FOR BIOMEDICAL RES · PI VALLEE, RICHARD BERT · 1996 to 2006
$3.5M
MOLECULAR GENETICS OF CYTOPLASMIC DYNEINR01GM047434 · NIGMS · WORCESTER FOUNDATION FOR BIOMEDICAL RES · PI VALLEE, RICHARD BERT · 1992 to 2010
$2.6M
NIGMS NIH HHS GM47434NIGMS NIH HHS R01 GM047434NIGMS NIH HHS R37 GM047434
6 · The paper itself

Abstract

Here, we present the 1.9-A crystal structure of the nucleotide-free GTPase domain of dynamin 1 from Rattus norvegicus. The structure corresponds to an extended form of the canonical GTPase fold observed in Ras proteins. Both nucleotide-binding switch motifs are well resolved, adopting conformations that closely resemble a GTP-bound state not previously observed for nucleotide-free GTPases. Two highly conserved arginines, Arg-66 and Arg-67, greatly restrict the mobility of switch I and are ideally positioned to relay information about the nucleotide state to other parts of the protein. Our results support a model in which switch I residue Arg-59 gates GTP binding in an assembly-dependent manner and the GTPase effector domain functions as an assembly-dependent GTPase activating protein in the fashion of RGS-type GAPs.

Indexed as

AnimalsArginineCatalysisCrystallizationCrystallography, X-RayDynamin IEnzyme ActivationGTP PhosphohydrolasesGuanosine TriphosphateKineticsMutationProtein Structure, TertiaryRatsArginineDynamin IGTP PhosphohydrolasesGuanosine Triphosphate

Identifiers

PMID16141317
PMCPMC1201622
OpenAlexW2160809534

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.