Evidence map›Paper›PMID 16140745›Full record

ArticleJournal of virology2005

Combined effect of CCR5-Delta32 heterozygosity and the CCR5 promoter polymorphism -2459 A/G on CCR5 expression and resistance to human immunodeficiency virus type 1 transmission.

Florian Hladik, Huanliang Liu, Emily Speelmon, Devon Livingston-Rosanoff, Sean Wilson, Polachai Sakchalathorn, Yon Hwangbo, Benjamin Greene, Tuofu Zhu, M Juliana McElrath

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 1 synthesis or guideline pooled it, 96 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. HIV-1 and human genetic variation.Nature reviews. Genetics · 2021
    Review
  6. Article
  7. Review
  8. Chemokine receptor gene polymorphisms and COVID-19: Could knowledge gained from HIV/AIDS be important?Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. CCR2, CCR5, and CXCL12 variation and HIV/AIDS in Papua New Guinea.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2015
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Florian HladikFred Hutchinson Cancer Research Center, Clinical Research Division, Program in Infectious Diseases, 1100 Fairview Ave. N., P.O. Box 19024, D3-100, Seattle, WA 98109-1024, USA.
Huanliang Liu
Emily Speelmon
Devon Livingston-Rosanoff
Sean Wilson
Polachai Sakchalathorn
Yon Hwangbo
Benjamin Greene
Tuofu Zhu
M Juliana McElrath
Fred Hutch Cancer Center · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZAUniversity of Washington · USCancer Research Center · US

Funding

University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI MARI M KITAHATA · 1988 to 2026
$104.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008169 · NIGMS · EMORY UNIVERSITY · PI GROSS, ROBERT E · 1987 to 2021
$20.3M
Mucosal CTL Induction After HIV Exposure &VaccinationR37AI035605 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MCELRATH, MARGARET JULIANA · 1998 to 2007
$3.4M
Role of CD14+ Monocytes in HIV-1 InfectionR01AI049109 · NIAID · UNIVERSITY OF WASHINGTON · PI ZHU, TUOFU · 2001 to 2005
$1.3M
SUPPRESSING HIV INFECTION IN EXPOSED SERONEGATIVE ADULTSR01AI045402 · NIAID · UNIVERSITY OF WASHINGTON · PI ZHU, TUOFU · 1999 to 2003
$873k
Mechanisms of Sexual HIV-1 TransmissionK08AI051980 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HLADIK, FLORIAN · 2002 to 2006
$589k
Effect of DC-SIGNR Polymorphisms on HIV-1 InfectionR21AI056994 · NIAID · UNIVERSITY OF WASHINGTON · PI ZHU, TUOFU · 2003 to 2003
$373k
CMIG FOR AIDS VACCINER01AI035605 · NIAID · UNIVERSITY OF WASHINGTON · PI MCELRATH, MARGARET JULIANA · 1994 to 1997
–
NIAID NIH HHS AI 27757NIAID NIH HHS AI 35605NIAID NIH HHS AI 45402NIAID NIH HHS AI 49109NIAID NIH HHS AI 51980NIAID NIH HHS AI 56994NIAID NIH HHS K08 AI051980NIAID NIH HHS P30 AI027757NIAID NIH HHS R01 AI045402NIAID NIH HHS R01 AI049109NIAID NIH HHS R21 AI056994NIAID NIH HHS R37 AI035605NIGMS NIH HHS T32 GM008169
6 · The paper itself

Abstract

Exposed seronegative individuals (ES) with persistent high-risk sexual behavior may be less susceptible to human immunodeficiency virus type 1 (HIV-1) infection because they carry the chemokine receptor (CR) gene alleles CCR5 open reading frame (ORF) Delta32, CCR5 promoter -2459G, or CCR2 ORF 64I (CCR2-64I), all of which have been found to diminish HIV-1 infectivity and/or disease progression. To investigate this, we determined the haplotypes for these three genetic loci in 93 ES and 247 low-risk control individuals. To test if protective haplotypes exert their effect by modulating CR expression, we measured the protein expression of CCR5 and CXCR4 on circulating CD4+ T cells and CD14+ monocytes in 71 ES and 92 controls. To avoid investigator bias, the analysis was performed without knowledge of each subject's risk and genotype. The CCR5 -2459G allele was significantly enriched in ES Caucasian men, who constituted the majority (84%) of the ES cohort, compared to the control Caucasian men (P = 0.02). This increase was mostly attributable to a higher frequency of the -2459 A/G versus the -2459 A/A genotype in individuals heterozygous for the delta32 allele (P = 0.012). No protective influence of the CCR2-64I allele was observed. The haplotypes CCR5 ORF delta32/CCR5 -2459A (in complete linkage disequilibrium) and CCR5 ORF wt/CCR5 -2459G had a cumulative negative effect on the expression of CCR5, since we measured significantly reduced CCR5 densities on both T-helper cells and monocytes only when both haplotypes were present. Densities of CCR5 on lymphocytes and monocytes were correlated (r = 0.59; P < 0.0001), indicating concordance of CCR5 expression patterns across different cell types. We conclude that the CCR5 ORF delta32/wt-CCR5 -2459 A/G genotype combination offers an advantage in resisting sexual HIV-1 transmission and that this effect is mediated by a relative paucity of CCR5 on potential target cells of HIV-1.

Indexed as

Base SequenceCase-Control StudiesCD4-Positive T-LymphocytesDNAGene ExpressionHeterozygoteHIV-1HIV InfectionsHIV SeronegativityHumansIn Vitro TechniquesMaleMonocytesPolymorphism, GeneticPromoter Regions, GeneticReceptors, CCR5DNAReceptors, CCR5

Identifiers

PMID16140745
PMCPMC1212613
OpenAlexW2118812814

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.