Evidence map›Paper›PMID 16136361›Full record

ArticleJournal of plant research2005

Analysis of differentially expressed transcripts of fungal elicitor- and wound-treated wild rice (Oryza grandiglumis).

Kyung Mi Kim, Sung Ki Cho, Sang Hyun Shin, Gyung-Tae Kim, Jai Heon Lee, Boung-Jun Oh, Kyung Ho Kang, Jong Chan Hong, Jun Young Choi, Jeong Sheop Shin and 1 more

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Article in Journal of plant research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Kyung Mi KimDepartment of Genetic Engineering, Dong-A University, Pusan, South Korea. chungys@daunet.donga.ac.kr
Sung Ki Cho
Sang Hyun Shin
Gyung-Tae Kim
Jai Heon Lee
Boung-Jun Oh
Kyung Ho Kang
Jong Chan Hong
Jun Young Choi
Jeong Sheop Shin
Young Soo Chung
Dong-A University · KRKorea University · KRBiotechnology Research Center · IRGyeongsang National University · KRRural Development Administration · KRSangmyung University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Suppression subtractive hybridization was used to construct a subtracted library (ogfw) from plants of a wild rice species, Oryza grandiglumis, subjected to a fungal elicitor and physical wounding. To screen the differentially expressed transcripts in the library, we applied a reverse Northern blot analysis to a cDNA microarray containing 1,152 random clones. Based on the average expression ratio, we selected 156 clones showing an elevated expression level. The elevated expression levels and overall expression profiles over time were verified by Northern blot analysis. A comparative functional categorization of the subtracted expressed sequence tags (ESTs) of the ogfw library against ESTs isolated from blast-infected O. sativa showed that the functional categories of cell rescue, defense and virulence, transcription, and cellular transport and transport mechanism of the ogfw library were threefold higher in the former than in the latter. These subtracted ESTs can be presumed to be related to the defense/resistance system and will be used to investigate the defense mechanisms of wild rice and to provide new insights into the genome of wild rice, which in turn will assist molecular breeding strategies of cultivated rice.

Indexed as

Amino Acid SequenceBase SequenceDNA PrimersExpressed Sequence TagsFungiGene Expression ProfilingMolecular Sequence DataOryzaPlant ProteinsRNA, MessengerSequence Homology, Amino AcidDNA PrimersPlant ProteinsRNA, Messenger

Identifiers

PMID16136361
OpenAlexW2090587640

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.