Evidence map›Paper›PMID 16133661›Full record

ArticleJournal of human genetics2005

Mutational and structural analysis of Japanese patients with mucopolysaccharidosis type II.

Tomomi Kato, Zenichiro Kato, Izumi Kuratsubo, Noboru Tanaka, Tabito Ishigami, Jun-Ichi Kajihara, Kazuko Sukegawa-Hayasaka, Koji Orii, Koji Isogai, Toshiyuki Fukao and 4 more

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Journal of human genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 42 citations in OpenAlex.

  1. Identification and Functional Characterization ofInternational journal of molecular sciences · 2019
    Trial
  2. Article
  3. Review
  4. Epidemiology of Mucopolysaccharidoses Update.Diagnostics (Basel, Switzerland) · 2021
    Review
  5. Effect of MutatedDiagnostics (Basel, Switzerland) · 2020
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Tomomi KatoDepartment of Pediatrics, Gifu University Graduate School of Medicine, Gifu, Japan. tomok@cc.gifu-u.ac.jp.
Zenichiro KatoDepartment of Pediatrics, Gifu University Graduate School of Medicine, Gifu, Japan.
Izumi KuratsuboDepartment of Pediatrics, Gifu University Graduate School of Medicine, Gifu, Japan.
Noboru TanakaResearch Center, Japan Chemical Research Pharmaceuticals Co. Ltd., Kobe, Japan.
Tabito IshigamiResearch Center, Japan Chemical Research Pharmaceuticals Co. Ltd., Kobe, Japan.
Jun-Ichi KajiharaResearch Center, Japan Chemical Research Pharmaceuticals Co. Ltd., Kobe, Japan.
Kazuko Sukegawa-HayasakaDepartment of Pediatrics, Gifu University Graduate School of Medicine, Gifu, Japan.
Koji OriiDepartment of Pediatrics, Gifu University Graduate School of Medicine, Gifu, Japan.
Koji IsogaiDepartment of Pediatrics, Gifu University Graduate School of Medicine, Gifu, Japan.
Toshiyuki FukaoDepartment of Pediatrics, Gifu University Graduate School of Medicine, Gifu, Japan.
Nobuyuki ShimozawaDivision of Genomic Research, Life Science Research Center, Gifu University, Gifu, Japan.
Tadao OriiChubu Gakuin University, Gifu, Japan.
Naomi KondoDepartment of Pediatrics, Gifu University Graduate School of Medicine, Gifu, Japan.
Yasuyuki SuzukiDepartment of Pediatrics, Gifu University Graduate School of Medicine, Gifu, Japan.
Gifu University · JPChubu Gakuin University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigated mutations of the iduronate-2-sulfatase (I2S) gene and structural characteristics of I2S to clarify genotype/phenotype relationships in 18 Japanese patients with mucopolysaccharidosis type II. The I2S gene was analyzed in five patients with a severe phenotype and in 13 patients with an attenuated phenotype. The tertiary structural model of the human I2S was constructed by homology modeling using the arylsulfatase structure as a template. We identified four missense mutations and a nonsense mutation in the severe phenotype; four missense, two nonsense, three frame shifts, and one each of splice and amino acid deletion in the attenuated phenotype. Seven of them (L73del, Q75X, G140R, C171R, V401 fs, C422 fs, and H441 fs) were novel mutations. Structural analysis indicated that the residues of the mutations found in the severe phenotype would have direct interactions with the active site residues or should break the hydrophobic core domain of I2S, whereas residues of the missense mutations found in the attenuated phenotype were located in the peripheral region. In addition, effects by deletion or frameshift mutations could also be interpreted by the structure. Structural analysis of mutant proteins would help in understanding the genotype/phenotype relationships of Hunter disease.

Indexed as

DNA Mutational AnalysisMutationAdolescentAdultAlternative SplicingAmino Acid SequenceBase SequenceBinding SitesChildChild, PreschoolCodon, NonsenseFrameshift MutationHumansIduronate SulfataseJapanModels, MolecularCodon, NonsenseIduronate Sulfatase

Identifiers

PMID16133661
OpenAlexW1987251162

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.