Evidence map›Paper›PMID 16132950›Full record

ArticleDiabetologia2005

The linkage and association of the gene encoding upstream stimulatory factor 1 with type 2 diabetes and metabolic syndrome in the Chinese population.

M C Y Ng, K Miyake, W Y So, E W M Poon, V K L Lam, J K Y Li, N J Cox, G I Bell, J C N Chan

Open access · bronzeAbstract read
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In one paragraph

Article in Diabetologia, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 67 citations in OpenAlex.

  1. Trial
  2. Article
  3. Heliyon · 2019
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. The genetics of familial combined hyperlipidaemia.Nature reviews. Endocrinology · 2012
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Association analysis of allelic variants of USF1 in coronary atherosclerosis.Arteriosclerosis, thrombosis, and vascular biology · 2008
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

M C Y NgDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA. maggieng@uchicago.edu
K Miyake
W Y So
E W M Poon
V K L Lam
J K Y Li
N J Cox
G I Bell
J C N Chan
Chinese University of Hong Kong · CNUniversity of Chicago · USPrince of Wales Hospital · CN

Funding

TRANSGENIC COREP60DK020595 · NIDDK · UNIVERSITY OF CHICAGO · PI BELL, GRAEME I · 1985 to 2012
$25.5M
Pilot and Feasibility ProgramP30DK020595 · NIDDK · UNIVERSITY OF CHICAGO · PI Matthew J Brady · 2013 to 2026
$20.9M
CONSORTIUM LINKAGE STUDIES OF TYPE 2 DIABETESU01DK058026 · NIDDK · UNIVERSITY OF CHICAGO · PI COX, NANCY J. · 1999 to 2004
$7.5M
GENES FOR NONINSULIN-DEPENDENT DIABETES MELLITUSR01DK047486 · NIDDK · UNIVERSITY OF CHICAGO · PI BELL, GRAEME I · 1993 to 2003
$1.3M
Robust Methods for Indentifying Genes for Complex TraitsR01DK055889 · NIDDK · UNIVERSITY OF CHICAGO · PI COX, NANCY J. · 1998 to 2004
$1.3M
NIDDK NIH HHS DK-20595NIDDK NIH HHS DK-47486NIDDK NIH HHS DK-55889NIDDK NIH HHS DK-58026
6 · The paper itself

Abstract

aims/hypothesisThe transcription factor upstream stimulatory factor 1 (USF1) regulates the expression of genes involved in glucose and lipid metabolism and has been associated with familial combined hyperlipidaemia. USF1 is located on chromosome 1q22-23, a region with evidence for linkage to type 2 diabetes and various traits of the metabolic syndrome in Chinese and other populations. The aim of this study was to investigate the linkage and association of USF1 with type 2 diabetes and the metabolic syndrome in Chinese individuals. MATERIALS AND

methodsWe genotyped three haplotype-tagging single nucleotide polymorphisms (SNPs) (rs3737787, rs2516841 and rs2516839) at USF1 in three samples of the Hong Kong Chinese population, including members of 179 families from the Hong Kong Family Diabetes Study, 1,383 hospital cases with type 2 diabetes and/or the metabolic syndrome and 454 normal control subjects.

resultsWe found significant association of individual polymorphisms and haplotypes with type 2 diabetes and/or metabolic syndrome-related traits in the family samples using either family-based or unrelated normal control subjects. However, these variants could not explain much of the evidence for linkage in this region. Moreover, they were not associated with type 2 diabetes and/or the metabolic syndrome in the hospital cases. CONCLUSIONS/

interpretationThe results are consistent with the hypothesis that variation at USF1 contributes to the risk of type 2 diabetes and the metabolic syndrome in families with strong evidence for linkage in the chromosome 1q region. However, they provide little support for USF1 as the susceptibility locus that generates the observed evidence for linkage at 1q21-25 for type 2 diabetes and/or the metabolic syndrome, and USF1 does not appear to have a major contribution to these phenotypes in the general Chinese population.

Indexed as

AdultCase-Control StudiesChinaData Interpretation, StatisticalDiabetes Mellitus, Type 2FemaleGenetic LinkageGenotypeHaplotypesHumansLinkage DisequilibriumMaleMetabolic SyndromeMiddle AgedPhenotypePolymorphism, Single NucleotideUpstream Stimulatory FactorsUSF1 protein, human

Identifiers

PMID16132950
OpenAlexW2143298315

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.