Evidence map›Paper›PMID 16132821›Full record

ArticleJournal of biomolecular NMR2005

Solution structure of the second PDZ domain of the neuronal adaptor X11alpha and its interaction with the C-terminal peptide of the human copper chaperone for superoxide dismutase.

Aude E Duquesne, Martina de Ruijter, Jaap Brouwer, Jan W Drijfhout, Sander B Nabuurs, Chris A E M Spronk, Geerten W Vuister, Marcellus Ubbink, Gerard W Canters

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In one paragraph

Article in Journal of biomolecular NMR, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Novel mediators of amyloid precursor protein signaling.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2009
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Aude E DuquesneLeiden Institute of Chemistry, Leiden University, The Netherlands.
Martina de Ruijter
Jaap Brouwer
Jan W Drijfhout
Sander B Nabuurs
Chris A E M Spronk
Geerten W Vuister
Marcellus Ubbink
Gerard W Canters
Leiden University · NLRadboud University Nijmegen · NLLeiden University Medical Center · NLRadboud University Medical Center · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protection against reactive oxygen species is provided by the copper containing enzyme superoxide dismutase 1 (SOD1). The copper chaperone CCS is responsible for copper insertion into apo-SOD1. This role is impaired by an interaction between the second PDZ domain (PDZ2alpha) of the neuronal adaptor protein X11alpha and the third domain of CCS (McLoughlin et al. (2001) J. Biol. Chem., 276, 9303-9307). The solution structure of the PDZ2alpha domain has been determined and the interaction with peptides derived from CCS has been explored. PDZ2alpha binds to the last four amino acids of the CCS protein (PAHL) with a dissociation constant of 91 +/- 2 microM. Peptide variants have been used to map the interaction areas on PDZ2alpha for each amino acid, showing an important role for the C-terminal leucine, in line with canonical PDZ-peptide interactions.

Indexed as

Adaptor Proteins, Signal TransducingAmino Acid SequenceApoenzymesBinding SitesBrainCloning, MolecularCopperDNA, ComplementaryHumansMagnetic Resonance SpectroscopyModels, MolecularMolecular ChaperonesMolecular Sequence DataNerve Tissue ProteinsPeptide FragmentsProtein BindingAdaptor Proteins, Signal TransducingAPBA1 protein, humanApoenzymesCCS protein, humanCopperDNA, ComplementaryMolecular ChaperonesNerve Tissue ProteinsPeptide FragmentsSOD1 protein, humanSolutionsSuperoxide DismutaseSuperoxide Dismutase-1

Identifiers

PMID16132821
OpenAlexW2147126573

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.