Evidence map›Paper›PMID 16131203›Full record

ArticleJournal of the American Chemical Society2005

Engineered biosynthesis of aklanonic acid analogues.

Taek Soon Lee, Chaitan Khosla, Yi Tang

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Rethinking Biosynthesis of Aclacinomycin A.Molecules (Basel, Switzerland) · 2023
    Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Biosynthesis of aromatic polyketides in bacteria.Accounts of chemical research · 2009
    Review
  8. Evolution of polyketide synthases in bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Taek Soon LeeDepartment of Chemistry, Stanford University, Stanford, California 94305, USA.
Chaitan Khosla
Yi Tang
University of California, Los Angeles · USStanford University · US

Funding

BACTERIAL AROMATIC POLYKETIDE SYNTHASESR01CA077248 · NCI · STANFORD UNIVERSITY · PI KHOSLA, CHAITAN · 1998 to 2011
$3.4M
Metabolic Engineering of Polyketide Production in E.coliR01GM067937 · NIGMS · STANFORD UNIVERSITY · PI KHOSLA, CHAITAN · 2003 to 2005
$489k
NCI NIH HHS CA 77248NCI NIH HHS R01 CA077248NIGMS NIH HHS R01 GM067937
6 · The paper itself

Abstract

Aklanonic acid, an anthraquinone natural product, is a common advanced intermediate in the biosynthesis of several antitumor polyketide antibiotics, including doxorubicin and aclacinomycin A. Intensive semisynthetic and biosynthetic efforts have been directed toward developing improved analogues of these clinically important compounds. The primer unit of such polyfunctional aromatic polyketides is an attractive site for introducing novel chemical functionality, and attempts have been made to modify the primer unit by precursor-directed biosynthesis or protein engineering of the polyketide synthase (PKS). We have previously demonstrated the feasibility of engineering bimodular aromatic PKSs capable of synthesizing unnatural hexaketides and octaketides. In this report, we extend this ability by preparing analogues of aklanonic acid, a decaketide, and its methyl ester. For example, by recombining the R1128 initiation module with the dodecaketide-specific pradimicin PKS, the isobutyryl-primed analogue of aklanonic acid (YT296b, 10) and its methyl ester (YT299b, 12) were prepared. In contrast, elongation modules from dodecaketide-specific spore pigment PKSs were unable to interact with the R1128 initiation module. Thus, in addition to revealing a practical route to new anthracycline antibiotics, we also observed a fundamental incompatibility between antibiotic and spore pigment biosynthesis in the actinomycetes bacteria.

Indexed as

BiotechnologyAclarubicinActinomycetalesAnthracyclinesAnthraquinonesAntibiotics, AntineoplasticBase SequenceBinding SitesDaunorubicinDoxorubicinEstersMacrolidesMolecular Sequence DataPolyketide SynthasesAclarubicinaklanonic acidAnthracyclinesAnthraquinonesAntibiotics, AntineoplasticDaunorubicinDoxorubicinEstersMacrolidesPolyketide Synthases

Identifiers

PMID16131203
PMCPMC1343498
OpenAlexW2024478270

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.