Evidence map›Paper›PMID 16129775›Full record

ArticleThe Journal of general physiology2005

Ligand-dependent linkage of the ATP site to inhibition gate closure in the KATP channel.

Lehong Li, Xuehui Geng, Michael Yonkunas, Anjey Su, Erik Densmore, Pei Tang, Peter Drain

Abstract read
In one paragraph

Article in The Journal of general physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Injectable Hydrogel Guides Neurons Growth with Specific Directionality.International journal of molecular sciences · 2023
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lehong LiDepartment of Cell Biology and Physiology, University of Pittsburgh School of Medicine, PA 15261, USA.
Xuehui Geng
Michael Yonkunas
Anjey Su
Erik Densmore
Pei Tang
Peter Drain

Funding

Human Beta Cell Parameters for Islet Engraftment SuccessR21DK068833 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DRAIN, PETER F · 2004 to 2005
$597k
NIDDK NIH HHS R21 DK068833NIDDK NIH HHS R21 DK068833-01
6 · The paper itself

Abstract

Major advances have been made on the inhibition gate and ATP site of the K(ir)6.2 subunit of the K(ATP) channel, but little is known about conformational coupling between the two. ATP site mutations dramatically disrupt ATP-dependent gating without effect on ligand-independent gating, observed as interconversions between active burst and inactive interburst conformations in the absence of ATP. This suggests that linkage between site and gate is conditionally dependent on ATP occupancy. We studied all substitutions at position 334 of the ATP site in K(ir)6.2deltaC26 that express in Xenopus oocytes. All substitutions disrupted ATP-dependent gating by 10-fold or more. Only positive-charged arginine or lysine at 334, however, slowed ligand-independent gating from the burst, and this was in some but not all patches. Moreover, the polycationic peptide protamine reversed the slowed gating from the burst of 334R mutant channels, and speeded the slow gating from the burst of wild-type SUR1/K(ir)6.2 in the absence of ATP. Our results support a two-step ligand-dependent linkage mechanism for K(ir)6.2 channels in which ATP-occupied sites function to electrostatically dissociate COOH-terminal domains from the membrane, then as in all K(ir) channels, free COOH-terminal domains and inner M2 helices transit to a lower energy state for gate closure.

Indexed as

Ion Channel GatingAdenosine TriphosphateAmino Acid SubstitutionAnimalsArginineBinding SitesCells, CulturedCloning, MolecularDose-Response Relationship, DrugKcnj11 ChannelLysineMembrane PotentialsModels, MolecularOocytesPotassium Channels, Inwardly RectifyingProtaminesAdenosine TriphosphateArginineKcnj11 ChannelLysinePotassium Channels, Inwardly RectifyingProtaminesProtein Subunits

Identifiers

PMID16129775
PMCPMC2266580

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.