Evidence map›Paper›PMID 16129774›Full record

ArticleThe Journal of general physiology2005

Functional role and affinity of inorganic cations in stabilizing the tetrameric structure of the KcsA K+ channel.

Manoj N Krishnan, Jon-Paul Bingham, Siew Hwee Lee, Patrick Trombley, Edward Moczydlowski

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of general physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. A channel profile report of the unusual KThe Journal of general physiology · 2019
    Article
  6. Article
  7. Article
  8. Structure of potassium channels.Cellular and molecular life sciences : CMLS · 2015
    Review
  9. Article
  10. Role of methyl-induced polarization in ion binding.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  11. Article
  12. Article
  13. Mechanism for selectivity-inactivation coupling in KcsA potassium channels.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  14. Article
  15. Direct regulation of prokaryotic Kir channel by cholesterol.The Journal of biological chemistry · 2009
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Rationalizing alpha-helical membrane protein crystallization.Protein science : a publication of the Protein Society · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Manoj N KrishnanDepartment of Biology, Clarkson University, Potsdam, NY 13699, USA.
Jon-Paul Bingham
Siew Hwee Lee
Patrick Trombley
Edward Moczydlowski
Clarkson University · US

Funding

STRUCTURE/FUNCTION OF SLO CHANNELSP01NS042202 · NINDS · YALE UNIVERSITY · PI KACZMAREK, LEONARD K · 2001 to 2005
$7.4M
NINDS NIH HHS P01 NS042202NINDS NIH HHS P01 NS42202
6 · The paper itself

Abstract

Crystal structures of the tetrameric KcsA K+ channel reveal seven distinct binding sites for K+ ions within the central pore formed at the fourfold rotational symmetry axis. Coordination of an individual K+ ion by eight protein oxygen atoms within the selectivity filter suggests that ion-subunit bridging by cation-oxygen interactions contributes to structural stability of the tetramer. To test this hypothesis, we examined the effect of inorganic cations on the temperature dependence of the KcsA tetramer as monitored by SDS-PAGE. Inorganic cations known to permeate or strongly block K+ channels (K+, Rb+, Cs+, Tl+, NH4+, Ba2+, and Sr2+) confer tetramer stability at higher temperatures (T0.5 range = 87 degrees C to >99 degrees C) than impermeant cations and weak blockers (Li+, Na+, Tris+, choline+; T0.5 range = 59 degrees C to 77 degrees C). Titration of K+, Ba2+, and other stabilizing cations protects against rapid loss of KcsA tetramer observed in 100 mM choline Cl at 90 degrees C. Tetramer protection titrations of K+, Rb+, Cs+, Tl+, and NH4+ at 85 degrees C or 90 degrees C exhibit apparent Hill coefficients (N) ranging from 1.7 to 3.3 and affinity constants (K0.5) ranging from 1.1 to 9.6 mM. Ba2+ and Sr2+ titrations exhibit apparent one-site behavior (N congruent with 1) with K0.5 values of 210 nM and 11 microM, respectively. At 95 degrees C in the presence of 5 mM K+, titration of Li+ or Na+ destabilizes the tetramer with K0.5 values of 57 mM and 109 mM, respectively. We conclude that specific binding interactions of inorganic cations with the selectivity filter are an important determinant of tetramer stability of KscA.

Indexed as

Protein Structure, QuaternaryBacterial ProteinsBinding SitesDose-Response Relationship, DrugEscherichia coliGenes, SyntheticLithiumLithium ChlorideOsmolar ConcentrationPlasmidsPotassiumPotassium ChannelsPotassium ChlorideSodiumSodium ChlorideTemperatureBacterial ProteinsLithiumLithium ChloridePotassiumPotassium ChannelsPotassium Chlorideprokaryotic potassium channelSodiumSodium Chloride

Identifiers

PMID16129774
PMCPMC2266582
OpenAlexW2062665005

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LicenceCC BY-NC-SA
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.