ArticlePLoS genetics2005
A global survey of gene regulation during cold acclimation in Arabidopsis thaliana.
Article in PLoS genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 191 papers.
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Who cites it
191 citing papers in PubMed, 465 citations in OpenAlex.
- Global profiling of alternative splicing landscapes in response to cold stress during the cotyledon stage in cotton.BMC genomics · 2026Article
- Temporal and genotype-dependent transcriptomic responses to cold treatment and recovery in winter rapeseed (Frontiers in plant science · 2026Article
- Time-course transcriptome and WGCNA reveal tissue-specific genes in 'White BK-1' rye during early cold acclimation stage.Frontiers in plant science · 2026Article
- Plant cold acclimation and its impact on sensitivity of carbohydrate metabolism.NPJ systems biology and applications · 2025Article
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- Genome-wide identification of B-box zinc finger (BBX) gene family in Medicago sativa and their roles in abiotic stress responses.BMC genomics · 2024Article
- Transcriptomic analysis ofFrontiers in plant science · 2024Article
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- Auxin and abiotic stress responses.Journal of experimental botany · 2023Review
- Orthogroup and phylotranscriptomic analyses identify transcription factors involved in the plant cold response: A case study of Arabidopsis BBX29.Plant communications · 2023Article
- A phylotranscriptomic dataset of angiosperm species under cold stress.Scientific data · 2023Article
- Genome-Wide Identification ofInternational journal of molecular sciences · 2023Article
- High-resolution Hi-C maps highlight multiscale chromatin architecture reorganization during cold stress in Brachypodium distachyon.BMC plant biology · 2023Article
- Transcriptome analysis revealed molecular basis of cold response inMolecular breeding : new strategies in plant improvement · 2023Article
- Identification of Novel QTLs Associated with Frost Tolerance in Winter Wheat (Plants (Basel, Switzerland) · 2023Article
- Transcriptomics Reveals the Effect of Short-Term Freezing on the Signal Transduction and Metabolism of Grapevine.International journal of molecular sciences · 2023Article
- Transcriptomic Analysis of Yunwu Tribute Tea Leaves under Cold Stress.Current issues in molecular biology · 2023Article
- Temporal cell wall changes during cold acclimation and deacclimation and their potential involvement in freezing tolerance and growth.Physiologia plantarum · 2023Article
- Freezing stress response of wild and cultivated chickpeas.Frontiers in plant science · 2023Article
131 more citing papers are in PubMed but not listed here.
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Authors and funding
3 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Many temperate plant species such as Arabidopsis thaliana are able to increase their freezing tolerance when exposed to low, nonfreezing temperatures in a process called cold acclimation. This process is accompanied by complex changes in gene expression. Previous studies have investigated these changes but have mainly focused on individual or small groups of genes. We present a comprehensive statistical analysis of the genome-wide changes of gene expression in response to 14 d of cold acclimation in Arabidopsis, and provide a large-scale validation of these data by comparing datasets obtained for the Affymetrix ATH1 Genechip and MWG 50-mer oligonucleotide whole-genome microarrays. We combine these datasets with existing published and publicly available data investigating Arabidopsis gene expression in response to low temperature. All data are integrated into a database detailing the cold responsiveness of 22,043 genes as a function of time of exposure at low temperature. We concentrate our functional analysis on global changes marking relevant pathways or functional groups of genes. These analyses provide a statistical basis for many previously reported changes, identify so far unreported changes, and show which processes predominate during different times of cold acclimation. This approach offers the fullest characterization of global changes in gene expression in response to low temperature available to date.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.