Evidence map›Paper›PMID 16116097›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Platinum anticancer drug damage enforces a particular rotational setting of DNA in nucleosomes.

Andrew J Danford, Dong Wang, Qun Wang, Thomas D Tullius, Stephen J Lippard

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Chromatin Regulates Genome Targeting with Cisplatin.Angewandte Chemie (International ed. in English) · 2017
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Photochemical internalization-mediated delivery of chemotherapeutic agents in human breast tumor cell lines.Journal of environmental pathology, toxicology and oncology : official organ of the International Society for Environmental Toxicology and Cancer · 2012
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Inhibition of transcription by platinum antitumor compounds.Metallomics : integrated biometal science · 2009
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Andrew J DanfordDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Dong Wang
Qun Wang
Thomas D Tullius
Stephen J Lippard
Massachusetts Institute of Technology · USBoston University · US

Funding

Understanding and Improving Platinum Anticancer DrugsR01CA034992 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI YILMAZ, OMER · 1985 to 2018
$6.8M
CHEMISTRY AND BIOLOGY OF PLATINUM ANTICANCER DRUGSR37CA034992 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LIPPARD, STEPHEN J. · 1990 to 2008
$5.7M
FOOTPRINTING WITH IRON(II)-GENERATED HYDROXYL RADICALR01GM041930 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI TULLIUS, THOMAS D · 1989 to 2003
$1.0M
NCI NIH HHS CA-34992NCI NIH HHS R01 CA034992NCI NIH HHS R37 CA034992NIGMS NIH HHS GM41930NIGMS NIH HHS R01 GM041930
6 · The paper itself

Abstract

We constructed two site-specifically modified nucleosomes containing an intrastrand cis-{Pt(NH3)2}2+ 1,3-d(GpTpG) cross-link, similar to one formed by the anticancer drugs carboplatin and cisplatin on DNA, and investigated their structures by hydroxyl radical footprinting and exonuclease III digestion. Hydroxyl radical footprinting demonstrated that the presence of the platinum cross-link selects out a specific rotational setting of DNA on the histone octamer core in each of two reconstituted nucleosomes in which the platinum positions differ by half a DNA helical turn. The {Pt(NH3)2}2+ cross-link is situated in a structurally similar location, with the undamaged strand projecting outward, forcing the DNA to adopt opposite rotational settings in its wrapping around the histone octamer in the two nucleosomes. Enzymatic digestion by exonuclease III of the nucleosome substrates revealed that the platinum cross-link affects the translational positioning of the DNA, forcing it into an asymmetric arrangement with respect to the core histone proteins. We suggest that these phasing phenomena may be central to the recognition and processing of platinum-DNA adducts in cancer cells treated with these drugs and possibly may be common to other DNA damaging events.

Indexed as

AnimalsAntineoplastic AgentsCarboplatinCHO CellsCisplatinCricetinaeCross-Linking ReagentsDNA AdductsDNA DamageDNA FootprintingDNA RepairExodeoxyribonucleasesHydroxyl RadicalIn Vitro TechniquesModels, MolecularNucleic Acid ConformationAntineoplastic AgentsCarboplatinCisplatinCross-Linking ReagentsDNA Adductsexodeoxyribonuclease IIIExodeoxyribonucleasesHydroxyl RadicalNucleosomes

Identifiers

PMID16116097
PMCPMC1194956
OpenAlexW2133994564

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.