Evidence map›Paper›PMID 16113228›Full record

ArticlePlant physiology2005

TANMEI/EMB2757 encodes a WD repeat protein required for embryo development in Arabidopsis.

Kazutoshi Yamagishi, Noriko Nagata, Kelly Matsudaira Yee, Siobhan A Braybrook, Julie Pelletier, Shozo Fujioka, Shigeo Yoshida, Robert L Fischer, Robert B Goldberg, John J Harada

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

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  3. Frontiers in plant science · 2021
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  4. Depletion ofInternational journal of molecular sciences · 2019
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  5. A multi-level response to DNA damage induced by aluminium.The Plant journal : for cell and molecular biology · 2019
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  9. Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  10. Article
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  14. Article
  15. Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Kazutoshi YamagishiSection of Plant Biology, College of Biological Sciences, University of California, Davis, 95616, USA.
Noriko Nagata
Kelly Matsudaira Yee
Siobhan A Braybrook
Julie Pelletier
Shozo Fujioka
Shigeo Yoshida
Robert L Fischer
Robert B Goldberg
John J Harada
RIKEN · JPUniversity of California, Berkeley · USUniversity of California, Los Angeles · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We identified the Arabidopsis (Arabidopsis thaliana) tanmei/emb2757 (tan) mutation that causes defects in both embryo and seedling development. tan mutant embryos share many characteristics with the leafy cotyledon (lec) class of mutants in that they accumulate anthocyanin, are intolerant of desiccation, form trichomes on cotyledons, and have reduced accumulation of storage proteins and lipids. Thus, TAN functions both in the early and late phases of embryo development. Moreover, the TAN and LEC genes interact synergistically, suggesting that they do not act in series in the same genetic pathway but, rather, that they have overlapping roles during embryogenesis. tan mutants die as embryos, but immature mutant seeds can be germinated in culture. However, tan mutant seedlings are defective in shoot and root development, their hypocotyls fail to elongate in the dark, and they die as seedlings. We isolated the TAN gene and showed that the predicted polypeptide has seven WD repeat motifs, suggesting that TAN forms complexes with other proteins. Together, these results suggest that TAN interacts with other proteins to control many aspects of embryo development.

Indexed as

Amino Acid MotifsAmino Acid SequenceArabidopsisArabidopsis ProteinsEmbryonic DevelopmentGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGenes, PlantMolecular Sequence DataMutationPhenotypeSeedlingsSeedsSequence Homology, Amino AcidArabidopsis ProteinsTAN protein, Arabidopsis

Identifiers

PMID16113228
PMCPMC1203366
OpenAlexW2151053055

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.