ArticleGenome research2005
Comparative genomics of Gossypium and Arabidopsis: unraveling the consequences of both ancient and recent polyploidy.
Article in Genome research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
25 citing papers in PubMed, 1 synthesis or guideline pooled it, 62 citations in OpenAlex.
- Pooled it
- A Conserved miR172-Plants (Basel, Switzerland) · 2026Article
- GhIMP10D, an inositol monophosphates family gene, enhances ascorbic acid and antioxidant enzyme activities to confer alkaline tolerance in Gossypium hirsutum L.BMC plant biology · 2023Article
- Transcriptome Meta-Analysis Associated Targeting Hub Genes and Pathways of Drought and Salt Stress Responses in Cotton (Frontiers in plant science · 2022Article
- A genome-wide comparative analysis of bZIP transcription factors inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- An EMS-induced mutation in a tetratricopeptide repeat-like superfamily protein gene (Ghir_A12G008870) on chromosome A12 is responsible for the liTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Genome-wide comparative and evolutionary analysis of Calmodulin-binding Transcription Activator (CAMTA) family in Gossypium species.Scientific reports · 2018Article
- Microdissection of the AHereditas · 2017Article
- Toward Coalescing Gene Expression and Function with QTLs of Water-Deficit Stress in Cotton.International journal of plant genomics · 2015Article
- Exploiting a Reference Genome in Terms of Duplications: The Network of Paralogs and Single Copy Genes in Arabidopsis thaliana.Biology · 2013Article
- A whole-genome DNA marker map for cotton based on the D-genome sequence of Gossypium raimondii L.G3 (Bethesda, Md.) · 2013Article
- BAC-pool sequencing and analysis of large segments of A12 and D12 homoeologous chromosomes in upland cotton.PloS one · 2013Article
- Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.Nature · 2012Article
- Analyses of the sucrose synthase gene family in cotton: structure, phylogeny and expression patterns.BMC plant biology · 2012Article
- Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.BMC genomics · 2012Article
- Silencing GhNDR1 and GhMKK2 compromises cotton resistance to Verticillium wilt.The Plant journal : for cell and molecular biology · 2011Article
- A draft physical map of a D-genome cotton species (Gossypium raimondii).BMC genomics · 2010Article
- Resistance to Thielaviopsis basicola in the cultivated A genome cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Geminivirus-mediated gene silencing from Cotton leaf crumple virus is enhanced by low temperature in cotton.Plant physiology · 2008Article
- Synteny conservation between two distantly-related Rosaceae genomes: Prunus (the stone fruits) and Fragaria (the strawberry).BMC plant biology · 2008Article
Corrections and comments
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Authors and funding
9 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Both ancient and recent polyploidy, together with post-polyploidization loss of many duplicated gene copies, complicates angiosperm comparative genomics. To explore an approach by which these challenges might be mitigated, genetic maps of extant diploid and tetraploid cottons (Gossypium spp.) were used to infer the approximate order of 3016 loci along the chromosomes of their hypothetical common ancestor. The inferred Gossypium gene order corresponded more closely than the original maps did to a similarly inferred ancestral gene order predating an independent paleopolyploidization (alpha) in Arabidopsis. At least 59% of the cotton map and 53% of the Arabidopsis transcriptome showed correspondence in multilocus gene arrangements based on one or both of two software packages (CrimeStatII, FISH). Genomic regions in which chromosome structural rearrangement has been rapid (obscuring gene order correspondence) have also been subject to greater divergence of individual gene sequences. About 26%-44% of corresponding regions involved multiple Arabidopsis or cotton chromosomes, in some cases consistent with known, more ancient, duplications. The genomic distributions of multiple-locus probes provided early insight into the consequences for chromosome structure of an ancient large-scale duplication in cotton. Inferences that mitigate the consequences of ancient duplications improve leveraging of genomic information for model organisms in the study of more complex genomes.
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