Evidence map›Paper›PMID 16109944›Full record

ArticleJournal of bacteriology2005

Heterocyst-specific excision of the Anabaena sp. strain PCC 7120 hupL element requires xisC.

Claudio D Carrasco, Scott D Holliday, Alfred Hansel, Peter Lindblad, James W Golden

Abstract read
In one paragraph

Article in Journal of bacteriology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Photobiohydrogen Production and Strategies for HAdvances in biochemical engineering/biotechnology · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Genomic Characteristics ofFrontiers in microbiology · 2019
    Article
  8. Article
  9. Review
  10. Review
  11. Bacterial genome instability.Microbiology and molecular biology reviews : MMBR · 2014
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Nitrogen fixation and hydrogen metabolism in cyanobacteria.Microbiology and molecular biology reviews : MMBR · 2010
    Review
  19. Cyanobacterial heterocysts.Cold Spring Harbor perspectives in biology · 2010
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Claudio D CarrascoDepartment of Biology, Texas A&M University, 3258 TAMU, College Station, TX 77843-3258, USA.
Scott D Holliday
Alfred Hansel
Peter Lindblad
James W Golden

Funding

Regulation of Cyanobacterial Multicellular DevelopmentR01GM036890 · NIGMS · TEXAS A&M UNIVERSITY SYSTEM · PI GOLDEN, JAMES WILLIAM · 1986 to 2007
$2.0M
NIGMS NIH HHS GM36890NIGMS NIH HHS R01 GM036890
6 · The paper itself

Abstract

In nitrogen-limiting conditions, approximately 10% of the vegetative cells in filaments of the cyanobacterium Anabaena (Nostoc) sp. strain PCC 7120 differentiate into nitrogen-fixing heterocysts. During the late stages of heterocyst differentiation, three DNA elements, each embedded within an open reading frame, are programmed to excise from the chromosome by site-specific recombination. The DNA elements are named after the genes that they interrupt: nifD, fdxN, and hupL. The nifD and fdxN elements each contain a gene, xisA or xisF, respectively, that encodes the site-specific recombinase required for programmed excision of the element. Here, we show that the xisC gene (alr0677), which is present at one end of the 9,435-bp hupL element, is required for excision of the hupL element. A strain in which the xisC gene was inactivated showed no detectable excision of the hupL element. hupL encodes the large subunit of uptake hydrogenase. The xisC mutant forms heterocysts and grows diazotrophically, but unlike the wild type, it evolved hydrogen gas under nitrogen-fixing conditions. Overexpression of xisC from a plasmid in a wild-type background caused a low level of hupL rearrangement even in nitrogen-replete conditions. Expression of xisC in Escherichia coli was sufficient to produce rearrangement of an artificial substrate plasmid bearing the hupL element recombination sites. Sequence analysis indicated that XisC is a divergent member of the phage integrase family of recombinases. Site-directed mutagenesis of xisC showed that the XisC recombinase has functional similarity to the phage integrase family.

Indexed as

AnabaenaBacterial ProteinsBase SequenceChromosomes, BacterialDNA, BacterialGene DeletionGenetic Complementation TestOxidoreductasesPlasmidsPolymerase Chain ReactionRecombinasesRestriction MappingBacterial ProteinsDNA, BacterialHupL protein, AnabaenaOxidoreductasesRecombinases

Identifiers

PMID16109944
PMCPMC1196164

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.