Evidence map›Paper›PMID 16109312›Full record

ArticleFree radical biology & medicine2005

Endogenous DNA damage clusters in human skin, 3-D model, and cultured skin cells.

Paula V Bennett, Noelle L Cuomo, Sunirmal Paul, Stefan T Tafrov, Betsy M Sutherland

Open access · greenAbstract read
In one paragraph

Article in Free radical biology & medicine, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 45 citations in OpenAlex.

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  11. Abasic sites preferentially form at regions undergoing DNA replication.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2010
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Paula V BennettBiology Department, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Noelle L Cuomo
Sunirmal Paul
Stefan T Tafrov
Betsy M Sutherland
Brookhaven National Laboratory · US

Funding

DNA Damage Clusters: Repair in Mammalian CellsR01CA086897 · NCI · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SUTHERLAND, BETSY M · 2001 to 2004
$667k
NCI NIH HHS R01 CA086897NCI NIH HHS R01 CA086897-04NCI NIH HHS R01 CA86897
6 · The paper itself

Abstract

Clustered damages-two or more oxidized bases, abasic sites, or strand breaks on opposing DNA strands within a few helical turns-are formed in DNA by ionizing radiation. Clusters are difficult for cells to repair and thus pose significant challenges to genomic integrity. Although endogenous clusters were found in some permanent human cell lines, it was not known if clusters accumulated in human tissues or primary cells. Using high-sensitivity gel electrophoresis, electronic imaging, and number average length analysis, we determined endogenous cluster levels in DNA from human skin, a 3-D skin model, and primary cultured skin cells. DNA from dermis and epidermis of human skin contained extremely low levels of endogenous clusters (a few per gigabase). However, cultured skin fibroblasts and keratinocytes-whether in monolayer cultures or in 3-D model skin cultures-accumulated oxidized pyrimidine, oxidized purine, and abasic clusters. The levels of endogenous clusters were decreased by growing cells in the presence of selenium or by increasing cellular levels of Fpg protein, presumably by increasing processing of clustered damages. These results imply that the levels of endogenous clusters can be affected by the cells' external environment and their ability to deal with DNA damage.

Indexed as

DNA DamageAnimalsCells, CulturedCHO CellsCricetinaeDermisDNADNA RepairDose-Response Relationship, RadiationElectrophoresis, Agar GelEpidermal CellsFibroblastsHumansKeratinocytesOxygenPurinesDNAOxygenPurinespyrimidinePyrimidines

Identifiers

PMID16109312
PMCPMC1361695
OpenAlexW2018965969

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.