Evidence map›Paper›PMID 16107705›Full record

ArticleMolecular and cellular biology2005

ELAV multimerizes on conserved AU4-6 motifs important for ewg splicing regulation.

Matthias Soller, Kalpana White

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
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  19. mNature · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Matthias SollerDepartment of Biology, Brandeis University, Waltham, MA 02454, USA. msoller@brandeis.edu
Kalpana White
Brandeis University · US

Funding

THE MOLECULAR GENETIC BASIS OF SENSORY BEHAVIOR IN DROSOPHILAP01NS044232 · NINDS · BRANDEIS UNIVERSITY · PI GRIFFITH, LESLIE C · 2002 to 2011
$13.2M
NINDS NIH HHS NS44232NINDS NIH HHS P01 NS044232
6 · The paper itself

Abstract

ELAV is a gene-specific regulator of alternative pre-mRNA processing in Drosophila neurons. Since ELAV/Hu proteins preferentially bind to AU-rich regions that are generally abundant in introns and untranslated regions, it has not been clear how gene specificity is achieved. Here we used a combination of in vitro biochemical experiments together with phylogenetic comparisons and in vivo analysis of Drosophila transgenes to study ELAV binding to the last ewg intron and splicing regulation. In vitro binding studies of ELAV show that ELAV multimerizes on the ewg binding site and forms a defined and saturable complex. Further, sizing of the ELAV-RNA complex and a series of titration experiments indicate that ELAV forms a dodecameric complex on 135 nucleotides in the last ewg intron. Analysis of the substrate RNA requirements for ELAV binding and complex formation indicates that a series of AU(4-6) motifs spread over the entire binding site are important, but not a strictly defined sequence element. The importance of AU(4-6) motifs, but not spacing between them, is further supported by evolutionary conservation in several melanogaster species subgroups. Finally, using transgenes we demonstrate in fly neurons that ELAV-mediated regulation of ewg intron 6 splicing requires several AU(4-6) motifs and that introduction of spacer sequence between conserved AU(4-6) motifs has a minimal effect on splicing. Collectively, our results suggest that ELAV multimerization and binding to multiple AU(4-6) motifs contribute to target RNA recognition and processing in a complex cellular environment.

Indexed as

Gene Expression RegulationAnimalsAT Rich SequenceBase SequenceBinding SitesConserved SequenceDrosophila melanogasterDrosophila ProteinsELAV ProteinsEvolution, MolecularMolecular Sequence DataNerve Tissue ProteinsNeuropeptidesPhylogenyProtein BindingRNA-Binding ProteinsDrosophila ProteinsELAV ProteinsEWG protein, DrosophilaNerve Tissue ProteinsNeuropeptidesRNA-Binding ProteinsRNA, MessengerTranscription Factors

Identifiers

PMID16107705
PMCPMC1190278
OpenAlexW2000117107

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.