ArticleNucleic acids research2005
Distant sequences determine 5' end formation of cox3 transcripts in Arabidopsis thaliana ecotype C24.
Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- Imprinting but not cytonuclear interactions determines seed size heterosis in Arabidopsis hybrids.Plant physiology · 2024Article
- Repeats of Unusual Size in Plant Mitochondrial Genomes: Identification, Incidence and Evolution.G3 (Bethesda, Md.) · 2019Article
- The Complexity of Mitochondrial Complex IV: An Update of Cytochrome c Oxidase Biogenesis in Plants.International journal of molecular sciences · 2018Review
- The application of RNA-seq to the comprehensive analysis of plant mitochondrial transcriptomes.Molecular genetics and genomics : MGG · 2015Review
- Transcription of atp1 is influenced by both genomic configuration and nuclear background in the highly rearranged mitochondrial genomes of Silene vulgaris.Plant molecular biology · 2013Article
- Mitochondrial transcript length polymorphisms are a widespread phenomenon in Arabidopsis thaliana.Plant molecular biology · 2013Article
- Plant mitochondrial genome evolution can be explained by DNA repair mechanisms.Genome biology and evolution · 2013Article
- P-class pentatricopeptide repeat proteins are required for efficient 5' end formation of plant mitochondrial transcripts.RNA biology · 2013Review
- Natural variation in Arabidopsis: from molecular genetics to ecological genomics.Plant physiology · 2012Review
- Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis.BMC biology · 2011Article
- RNA PROCESSING FACTOR2 is required for 5' end processing of nad9 and cox3 mRNAs in mitochondria of Arabidopsis thaliana.The Plant cell · 2010Article
- Transcription profiles of mitochondrial genes correlate with mitochondrial DNA haplotypes in a natural population of Silene vulgaris.BMC plant biology · 2010Article
- Diversity of the Arabidopsis mitochondrial genome occurs via nuclear-controlled recombination activity.Genetics · 2009Article
- RNA processing in plant mitochondria is independent of transcription.Plant molecular biology · 2009Article
- Mitochondrial mRNA polymorphisms in different Arabidopsis accessions.Plant physiology · 2008Article
- Cytoplasmic suppression of Ogura cytoplasmic male sterility in European natural populations of Raphanus raphanistrum.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2007Article
- Article
- Plant mitochondrial recombination surveillance requires unusual RecA and MutS homologs.The Plant cell · 2007Article
- Mapping of mitochondrial mRNA termini in Arabidopsis thaliana: t-elements contribute to 5' and 3' end formation.Nucleic acids research · 2007Article
- The plant-specific ssDNA binding protein OSB1 is involved in the stoichiometric transmission of mitochondrial DNA in Arabidopsis.The Plant cell · 2006Article
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5 authors.
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Abstract
The genomic environments and the transcripts of the mitochondrial cox3 gene are investigated in three Arabidopsis thaliana ecotypes. While the proximate 5' sequences up to nucleotide position -584, the coding regions and the 3' flanking regions are identical in Columbia (Col), C24 and Landsberg erecta (Ler), genomic variation is detected in regions further upstream. In the mitochondrial DNA of Col, a 1790 bp fragment flanked by a nonanucleotide direct repeat is present beyond position -584 with respect to the ATG. While in Ler only part of this insertion is conserved, this sequence is completely absent in C24, except for a single copy of the nonanucleotide direct repeat. Northern hybridization reveals identical major transcripts in the three ecotypes, but identifies an additional abundant 60 nt larger mRNA species in C24. The extremities of the most abundant mRNA species are identical in the three ecotypes. In C24, an extra major 5' end is abundant. This terminus and the other major 5' ends are located in identical sequence regions. Inspection of Atcox3 transcripts in C24/Col hybrids revealed a female inheritance of the mRNA species with the extra 5' terminus. Thus, a mitochondrially encoded factor determines the generation of an extra 5' mRNA end.
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