Evidence map›Paper›PMID 16104379›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2005

Fine mapping of a major locus on chromosome 10 for exploratory and fear-like behavior in mice.

Shumin Zhang, Yigong Lou, Tara M Amstein, Monica Anyango, Neeman Mohibullah, Alfred Osoti, Devin Stancliffe, Robert King, Fuad Iraqi, Howard K Gershenfeld

Abstract read
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In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Fine-mapping QTLs in advanced intercross lines and other outbred populations.Mammalian genome : official journal of the International Mammalian Genome Society · 2014
    Review
  2. Article
  3. Article
  4. Article
  5. The genetic basis of adrenal gland weight and structure in BXD recombinant inbred mice.Mammalian genome : official journal of the International Mammalian Genome Society · 2011
    Article
  6. Review
  7. Article
  8. Article
  9. Congenic and bioinformatics analyses resolved a major-effect Fob3b QTL on mouse Chr 15 into two closely linked loci.Mammalian genome : official journal of the International Mammalian Genome Society · 2010
    Article
  10. RandoMate: a program for the generation of random mating schemes for small laboratory animals.Mammalian genome : official journal of the International Mammalian Genome Society · 2009
    Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Shumin ZhangDepartment of Psychiatry and Integrative Biology, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9070, USA.
Yigong Lou
Tara M Amstein
Monica Anyango
Neeman Mohibullah
Alfred Osoti
Devin Stancliffe
Robert King
Fuad Iraqi
Howard K Gershenfeld
The University of Texas Southwestern Medical Center · USInternational Livestock Research Institute · KE

Funding

POSITIONAL CLONING OF A PLEIOTROPIC LOCUS FOR BEHAVIORR01MH058882 · NIMH · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI GERSHENFELD, HOWARD K · 1998 to 2002
$688k
Gestational diabetes mellitus, gestational hypertension and risk of metabolic syndromeK43TW010363 · FIC · UNIVERSITY OF NAIROBI · PI OSOTI, ALFRED ONYANGO · 2016 to 2020
$566k
FIC NIH HHS K43 TW010363NIMH NIH HHS R01-MH58882
6 · The paper itself

Abstract

Advanced intercross lines (AIL) and interval-specific congenic strains (ISCS) were used to fine map previously coarsely defined quantitative trait loci (QTL) on Chromosomes 1, 10, and 19, influencing behaviors in the open Field (OF) and light-dark (LD) paradigms in mice. F12(A x B) AIL mice (N = 1130) were phenotyped, genotyped, and mapped. The ISCS were studied only in the telomeric Chromosome 10 region of interest, containing the exploratory and excitability QTL1 (Exq1). The Chromosome 10 Exq1 and Chromosome 19 Exq4 loci mapped robustly in the AIL. The most significant QTL findings (2.0 LOD score intervals; peak; LOD score) came from the TD15 and LD transitions traits, yielding estimated intervals of 2.2 cM for Exq1 (71.3-73.5 cM; peak 72.3 cM; LOD 11.9) and 9.0 cM for Exq4 (29.0-38.2 cM; peak 34 cM; LOD 4.2). The replicated QTLs on Chromosome 1 failed to map in this AIL population. The ISCS data confirmed Exq1 loci in general. However, the ISCS data were complex and less definitive for localizing the Exq1 loci. These exploratory and fear-like behaviors result from inheriting "many small things," namely, QTL explaining 2%-7% of the phenotypic variance. These results highlight the challenges of positionally cloning loci of small effect for complex traits. In particular, fine-mapping success may depend on the genetic architecture underlying complex traits.

Indexed as

Chromosome MappingQuantitative Trait LociAnimalsBase SequenceCrosses, GeneticDNA PrimersExploratory BehaviorFearFemaleGenetic MarkersMaleMiceMice, Inbred APhenotypePolymerase Chain ReactionDNA PrimersGenetic Markers

Identifiers

PMID16104379
OpenAlexW2014954766

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.