Evidence map›Paper›PMID 16103355›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Alleles of the NRAMP1 gene are risk factors for pediatric tuberculosis disease.

Suneil Malik, Laurent Abel, Heather Tooker, Audrey Poon, Leah Simkin, Manon Girard, Gerald J Adams, Jeffrey R Starke, Kimberly C Smith, Edward A Graviss and 2 more

Abstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it, 119 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Genetics and evolution of tuberculosis pathogenesis: New perspectives and approaches.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Review
  6. Review
  7. Article
  8. Review
  9. Human Genomics ofCurrent genetic medicine reports · 2017
    Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Human genetics of tuberculosis: a long and winding road.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Suneil MalikMcGill Centre for the Study of Host Resistance, Research Institute of the McGill University Health Centre, Montreal, Quebec, Canada H3G 1A4.
Laurent Abel
Heather Tooker
Audrey Poon
Leah Simkin
Manon Girard
Gerald J Adams
Jeffrey R Starke
Kimberly C Smith
Edward A Graviss
James M Musser
Erwin Schurr
McGill University · CABaylor College of Medicine · US

Funding

GENETIC EPIDEMIOLOGY OF TUBERCULOSIS SUSCEPTIBILITYR01AI041168 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI GRAVISS, EDWARD A · 1997 to 2001
$1.0M
NIAID NIH HHS AI 41168-01
6 · The paper itself

Abstract

Relatively little is known about the human genetics of susceptibility to common diseases caused by bacterial pathogens. Tuberculosis, caused by Mycobacterium tuberculosis, is a major cause of morbidity and mortality worldwide. So far, genetic studies of tuberculosis susceptibility have largely been focused on adult patients despite the fact that tuberculosis is highly prevalent among children. To study the host genetic component of pediatric tuberculosis susceptibility, we enrolled 184 ethnically diverse families from the Greater Houston area with at least one child affected by pediatric tuberculosis disease. Using a family-based control design, we found allelic variants of the natural resistance-associated macrophage protein gene 1 (NRAMP1) (alias SLC11A1) significantly associated with tuberculosis disease in this pediatric patient population [P = 0.01; odds ratio = 1.75 (95% confidence interval, 1.10-2.77)]. The association of NRAMP1 with pediatric tuberculosis disease was significantly heterogeneous (P = 0.01) between simplex [P <0.0008; odds ratio = 3.13 (1.54-6.25)] and multiplex families (P = 1), suggesting an interplay between mechanisms of genetic control and exposure intensities. In striking contrast to previous studies in the adult population, we observed that the common alleles of NRAMP1 polymorphisms were risk factors for pediatric tuberculosis disease. To explain the different direction of allelic association between adult and pediatric disease, we hypothesize that NRAMP1 influences the speed of progression from infection to tuberculosis disease.

Indexed as

Polymorphism, GeneticAdultCation Transport ProteinsChildDNA PrimersFamilyGenetic Predisposition to DiseaseGenetics, PopulationGenotypeHumansLinkage DisequilibriumNatural Resistance-associated Macrophage Protein 1Polymorphism, Restriction Fragment LengthRisk FactorsTexasTuberculosisCation Transport ProteinsDNA PrimersNatural Resistance-associated Macrophage Protein 1

Identifiers

PMID16103355
PMCPMC1189316
OpenAlexW2135886670

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.