Evidence map›Paper›PMID 16100279›Full record

ArticleBiophysical journal2005

Molecular dynamics study of bipolar tetraether lipid membranes.

Wataru Shinoda, Keiko Shinoda, Teruhiko Baba, Masuhiro Mikami

Abstract read
In one paragraph

Article in Biophysical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Bilayer-Forming Lipids Enhance Archaeal Monolayer Membrane Stability.International journal of molecular sciences · 2025
    Article
  3. Isoprenoid CARTs:Biomacromolecules · 2024
    Article
  4. Membrane lipid and expression responses ofFrontiers in microbiology · 2023
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Mechanical properties of ester- and ether-DPhPC bilayers: A molecular dynamics study.Journal of the mechanical behavior of biomedical materials · 2021
    Article
  10. Article
  11. Article
  12. In Search for the Membrane Regulators of Archaea.International journal of molecular sciences · 2019
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Wataru ShinodaResearch Institute for Computational Sciences, National Institute of Advanced Industrial Science and Technology, Ibaraki 305-8568, Japan. w.shinoda@aist.go.jp
Keiko Shinoda
Teruhiko Baba
Masuhiro Mikami

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Membranes composed of bipolar tetraether lipids have been studied by a series of 25-ns molecular dynamics simulations to understand the microscopic structure and dynamics as well as membrane area elasticity. By comparing macrocyclic and acyclic tetraether and diether archaeal lipids, the effect of tail linkage of the two phytanyl-chained lipids on the membrane properties is elucidated. Tetraether lipids show smaller molecular area and lateral mobility. For the latter, calculated diffusion coefficients are indeed one order-of-magnitude smaller than that of the diether lipid. These two tetraether membranes are alike in many physical properties except for membrane area elasticity. The macrocyclic tetraether membrane shows a higher elastic area expansion modulus than its acyclic counterpart by a factor of three. Free energy profiles of a water molecule crossing the membranes show no major difference in barrier height; however, a significant difference is observed near the membrane center due to the lack of the slip-plane in tetraether membranes.

Indexed as

ArchaeaBiophysicsCarbonCell MembraneComputer SimulationDiffusionElasticityElectronsKineticsLipid BilayersLipidsMembrane FluidityMembrane LipidsMembranesModels, ChemicalModels, MolecularCarbonLipid BilayersLipidsMembrane LipidsWater

Identifiers

PMID16100279
PMCPMC1366815

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.