Evidence map›Paper›PMID 16099169›Full record

ArticleJournal of the American Society for Mass Spectrometry2005

Peptide mass mapping of acetylated isoforms of histone H4 from mouse lymphosarcoma cells treated with histone deacetylase (HDACs) inhibitors.

Chen Ren, Liwen Zhang, Michael A Freitas, Kalpana Ghoshal, Mark R Parthun, Samson T Jacob

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
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  3. Article
  4. Histone H1 phosphorylation in breast cancer.Journal of proteome research · 2014
    Article
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  14. Protein acetylation and histone deacetylase expression associated with malignant breast cancer progression.Clinical cancer research : an official journal of the American Association for Cancer Research · 2009
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Liquid chromatography mass spectrometry profiling of histones.Journal of chromatography. B, Analytical technologies in the biomedical and life sciences · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Chen RenDepartment of Chemistry, The Ohio State University, Columbus, Ohio 43210, USA.
Liwen Zhang
Michael A Freitas
Kalpana Ghoshal
Mark R Parthun
Samson T Jacob
The Ohio State University · US

Funding

Type B Histone Acetyltransferases and the Assembly of Chromatin StructureR01GM062970 · NIGMS · OHIO STATE UNIVERSITY · PI PARTHUN, MARK R · 2001 to 2018
$5.1M
Assays for Screening Histone Modifications in CancerR01CA107106 · NCI · OHIO STATE UNIVERSITY · PI FREITAS, MICHAEL A. · 2004 to 2013
$1.8M
Assays for Screening Histone Modificaitons in CancerR56CA107106 · NCI · OHIO STATE UNIVERSITY · PI FREITAS, MICHAEL A. · 2009 to 2009
$231k
NCI NIH HHS CA107106NCI NIH HHS CA61204NCI NIH HHS R01 CA107106NCI NIH HHS R56 CA107106NIEHS NIH HHS ES61204NIGMS NIH HHS GM62970NIGMS NIH HHS R01 GM062970
6 · The paper itself

Abstract

The acetylated isoforms of histone H4 from mouse lymphosarcoma cells treated with HDAC inhibitors trichostatin A (TSA) and depsipeptide (DDP) were separated by acetic acid urea-polyacrylamide gel electrophoresis (AU-PAGE), in-gel digested, and analyzed by matrix assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) and liquid chromatography tandem mass spectrometry (LC-MS/MS). The acetylation pattern of histone H4 in mouse lymphosarcoma cells induced by TSA was established in which acetylation initially occurred at K16 followed by K12 and then K8 and/or K5. An identical order of acetylation was found for cells treated with DDP.

Indexed as

Histone Deacetylase InhibitorsAcetylationAmino Acid SequenceAnimalsAntineoplastic AgentsCell Line, TumorDepsipeptidesHistonesHydroxamic AcidsLymphoma, Non-HodgkinMiceMolecular Sequence DataPeptide MappingProtein IsoformsAntineoplastic AgentsDepsipeptidesHistone Deacetylase InhibitorsHistonesHydroxamic AcidsProtein Isoformstrichostatin A

Identifiers

PMID16099169
PMCPMC2749475
OpenAlexW2004910767

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.