Evidence map›Paper›PMID 16096641›Full record

ArticleThe EMBO journal2005

A plant RNA virus suppresses RNA silencing through viral RNA replication.

Atsushi Takeda, Misato Tsukuda, Hiroyuki Mizumoto, Kimiyuki Okamoto, Masanori Kaido, Kazuyuki Mise, Tetsuro Okuno

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
13.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 137 citations in OpenAlex.

  1. Review
  2. Review
  3. Role of Plant Virus Movement Proteins in Suppression of Host RNAi Defense.International journal of molecular sciences · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. Harnessing host ROS-generating machinery for the robust genome replication of a plant RNA virus.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Atsushi TakedaLaboratory of Plant Pathology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.
Misato Tsukuda
Hiroyuki Mizumoto
Kimiyuki Okamoto
Masanori Kaido
Kazuyuki Mise
Tetsuro Okuno
Kyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA interference (RNAi) is a post-transcriptional gene-regulatory mechanism that operates in many eukaryotes. RNAi is induced by double-stranded RNA (dsRNA) and is mainly involved in defence against transposons and viruses. To counteract RNAi, viruses have RNAi suppressors. Here we show a novel mechanism of RNAi suppression by a plant virus Red clover necrotic mosaic virus (RCNMV). To suppress RNAi, RCNMV needs multiple viral components, which include viral RNAs and putative RNA replicase proteins. A close relationship between the RNA elements required for negative-strand RNA synthesis and RNAi suppression suggests a strong link between the viral RNA replication machinery and the RNAi machinery. In a transient assay, RCNMV interferes with the accumulation of small-interfering RNA (siRNAs) in RNAi induced by a hairpin dsRNA and it also interferes with microRNA (miRNA) biogenesis. An Arabidopsis dcl1 mutant showed reduced susceptibility to RCNMV infection. Based on these results, we propose a model in which, to replicate, RCNMV deprives the RNAi machinery of Dicer-like enzymes that are involved in both siRNA and miRNA biogenesis.

Indexed as

3' Untranslated RegionsArabidopsisArabidopsis ProteinsCell Cycle ProteinsMicroRNAsMutationPlant VirusesRibonuclease IIIRNA-Dependent RNA PolymeraseRNA InterferenceRNA, PlantRNA, Small InterferingRNA, ViralRNA Viruses3' Untranslated RegionsArabidopsis ProteinsCell Cycle ProteinsDCL1 protein, ArabidopsisMicroRNAsRibonuclease IIIRNA-Dependent RNA PolymeraseRNA, PlantRNA, Small InterferingRNA, Viral

Identifiers

PMID16096641
PMCPMC1201356
OpenAlexW2101183431

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.