ArticleGenome biology2005
Genome-wide promoter extraction and analysis in human, mouse, and rat.
Article in Genome biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
34 citing papers in PubMed.
- Epigenetic aberrations of gene expression in a rat model of hepatocellular carcinoma.Epigenetics · 2022Article
- MicroRNA 195-5p TargetsInternational journal of molecular sciences · 2021Article
- Epigenetic silencing of miR-520c leads to induced S100A4 expression and its mediated colorectal cancer progression.Oncotarget · 2017Article
- Directing an artificial zinc finger protein to new targets by fusion to a non-DNA-binding domain.Nucleic acids research · 2016Article
- Article
- Human coronary heart disease: importance of blood cellular miR-2909 RNomics.Molecular and cellular biochemistry · 2014Article
- Skp2 deletion unmasks a p27 safeguard that blocks tumorigenesis in the absence of pRb and p53 tumor suppressors.Cancer cell · 2013Article
- GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group.BMC genomics · 2012Article
- Application of an integrative computational framework in trancriptomic data of atherosclerotic mice suggests numerous molecular players.Advances in bioinformatics · 2012Article
- Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes.BMC bioinformatics · 2011Article
- Cross-species comparison of genomewide gene expression profiles reveals induction of hypoxia-inducible factor-responsive genes in iron-deprived intestinal epithelial cells.American journal of physiology. Cell physiology · 2010Article
- Identification of cis-regulatory elements in the mammalian genome: the cREMaG database.PloS one · 2010Article
- A transcriptomic computational analysis of mastic oil-treated Lewis lung carcinomas reveals molecular mechanisms targeting tumor cell growth and survival.BMC medical genomics · 2009Article
- Computational design and application of endogenous promoters for transcriptionally targeted gene therapy for rheumatoid arthritis.Molecular therapy : the journal of the American Society of Gene Therapy · 2009Article
- Comparative analysis of distinct non-coding characteristics potentially contributing to the divergence of human tissue-specific genes.Genetica · 2009Article
- High-resolution human core-promoter prediction with CoreBoost_HM.Genome research · 2009Article
- In silico regulatory analysis for exploring human disease progression.Biology direct · 2008Article
- CD36-dependent regulation of muscle FoxO1 and PDK4 in the PPAR delta/beta-mediated adaptation to metabolic stress.The Journal of biological chemistry · 2008Article
- FOXOs, cancer and regulation of apoptosis.Oncogene · 2008Review
- CREB binding and activity in brain: regional specificity and induction by electroconvulsive seizure.Biological psychiatry · 2008Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
Abstract
Large-scale and high-throughput genomics research needs reliable and comprehensive genome-wide promoter annotation resources. We have conducted a systematic investigation on how to improve mammalian promoter prediction by incorporating both transcript and conservation information. This enabled us to build a better multispecies promoter annotation pipeline and hence to create CSHLmpd (Cold Spring Harbor Laboratory Mammalian Promoter Database) for the biomedical research community, which can act as a starting reference system for more refined functional annotations.
Indexed as
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.