Evidence map›Paper›PMID 16081955›Full record

ArticleJournal of clinical microbiology2005

Genetic diversity among type emm28 group A Streptococcus strains causing invasive infections and pharyngitis.

Nicole M Green, Stephen B Beres, Edward A Graviss, James E Allison, Allison J McGeer, Jaana Vuopio-Varkila, Rance B LeFebvre, James M Musser

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. The group AInfection and immunity · 2025
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  9. New Insights onFrontiers in microbiology · 2021
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  15. The N-terminal domain of the R28 protein promotesThe Journal of biological chemistry · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Nicole M GreenCenter for Human Bacterial Pathogenesis Research, Department of Pathology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Stephen B Beres
Edward A Graviss
James E Allison
Allison J McGeer
Jaana Vuopio-Varkila
Rance B LeFebvre
James M Musser
Baylor College of Medicine · USNational Institute of Allergy and Infectious Diseases · USInstitute for Molecular Medicine Finland · FIUniversity of California, Davis · USUniversity of Toronto · CA

Funding

NOVEL GROUP A STREPTOCOCCUS HUMAN VACCINE CANDIDATESU01AI060595 · NIAID · METHODIST HOSPITAL RESEARCH INSTITUTE · PI MUSSER, JAMES MALLORY · 2004 to 2008
$3.4M
NIAID NIH HHS U01 AI060595NIAID NIH HHS U01-AI-060595
6 · The paper itself

Abstract

Genome sequencing of group A Streptococcus (GAS) has revealed that prophages account for the vast majority of gene content differences between strains. Serotype M28 strains are a leading cause of pharyngitis and invasive infections, but little is known about genetic diversity present in natural populations of these organisms. To study this issue, population-based samples of 568 strains from Ontario, Canada; Finland; and Houston, Texas, were analyzed. Special attention was given to analysis of variation in prophage-encoded virulence gene content by a PCR-based method. Thirty and 29 distinct prophage-encoded virulence gene profiles were identified among pharyngitis and invasive infection isolates. Thirteen profiles, representing the majority of the strains, were shared between these two classes of isolates. Significant differences were observed in the frequency of occurrence of certain prophage toxin gene profiles and infection type. M28 strains are highly diverse in prophage-encoded virulence gene content and integration site, supporting the key concept that prophages are critical contributors to GAS genetic diversity and population biology. Nucleotide sequence variation in the emm gene (encodes M protein) was also examined. Only three allelic variants were identified in the hypervariable portion of the emm28 gene. All but one strain had the same inferred amino acid sequence in the first 100 amino acids of the mature M28 protein. In contrast, size differences in the emm28 gene and inferred protein due to variable numbers of C-terminal repeats were common. The presence of macrolide resistance genes (mefA, ermB, and ermTR) was analyzed by PCR, and less than 2% of the strains were positive.

Indexed as

Antigens, BacterialBacterial Outer Membrane ProteinsCarrier ProteinsChromosome MappingDrug Resistance, BacterialGenetic VariationHumansMacrolidesPharyngitisProphagesStreptococcal InfectionsStreptococcus pyogenesVirulenceAntigens, BacterialBacterial Outer Membrane ProteinsCarrier ProteinsMacrolidesstreptococcal M protein

Identifiers

PMID16081955
PMCPMC1233891
OpenAlexW2166661460

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.