Evidence map›Paper›PMID 16080120›Full record

ArticleAmerican journal of human genetics2005

A high-density screen for linkage in multiple sclerosis.

Stephen Sawcer, Maria Ban, Mel Maranian, Tai Wai Yeo, Alastair Compston, Andrew Kirby, Mark J Daly, Philip L De Jager, Emily Walsh, Eric S Lander and 26 more

Abstract readComparative Study
In one paragraph

Article in American journal of human genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Meta-analysis of genome-wide linkage studies across autoimmune diseases.European journal of human genetics : EJHG · 2009
    Pooled it
  3. Pooled it
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  19. Pathways to cures for multiple sclerosis: A research roadmap.Multiple sclerosis (Houndmills, Basingstoke, England) · 2022
    Article
  20. Article

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors.

Stephen SawcerUniversity of Cambridge, Department of Clinical Neuroscience, Addenbrooke's Hospital, Hills Road, Cambridge, CB2 2QQ, United Kingdom. sjs1016@mole.bio.cam.ac.uk
Maria Ban
Mel Maranian
Tai Wai Yeo
Alastair Compston
Andrew Kirby
Mark J Daly
Philip L De Jager
Emily Walsh
Eric S Lander
John D Rioux
David A Hafler
Adrian Ivinson
Jacqueline Rimmler
Simon G Gregory
Silke Schmidt
Margaret A Pericak-Vance
Eva Akesson
Jan Hillert
Pameli Datta
Annette Oturai
Lars P Ryder
Hanne F Harbo
Anne Spurkland
Kjell-Morten Myhr
Mikko Laaksonen
David Booth
Robert Heard
Graeme Stewart
Robin Lincoln
Lisa F Barcellos
Stephen L Hauser
Jorge R Oksenberg
Shannon J Kenealy
Jonathan L Haines
International Multiple Sclerosis Genetics Consortium

Funding

The Slamf3, Slamf5, and Slamf6 receptor-induced pathways to murine lupusP01AI065687 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TERHORST, CORNELIS P · 2006 to 2016
$14.7M
Systemic Lupus Erythematosus and Ulcerative Colitis StudyU19AI067152 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KLARESKOG, LARS · 2005 to 2009
$10.1M
Universite de Montreal IBD Genetics Research CenterU01DK062432 · NIDDK · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI John D. Rioux · 2002 to 2026
$9.6M
The Genetic Epemiology of Multiple SclerosisR01NS032830 · NINDS · VANDERBILT UNIVERSITY · PI HAINES, JONATHAN L · 1995 to 2010
$8.9M
Identification of the IBD genes on chromosomes 3p and 6pR01DK064869 · NIDDK · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI RIOUX, JOHN D. · 2003 to 2016
$7.8M
NIAID NIH HHS P01 AI065687NIAID NIH HHS U19 AI067152NIDDK NIH HHS R01 DK064869NIDDK NIH HHS U01 DK062432NINDS NIH HHS NS032830NINDS NIH HHS R01 NS032830Wellcome Trust
6 · The paper itself

Abstract

To provide a definitive linkage map for multiple sclerosis, we have genotyped the Illumina BeadArray linkage mapping panel (version 4) in a data set of 730 multiplex families of Northern European descent. After the application of stringent quality thresholds, data from 4,506 markers in 2,692 individuals were included in the analysis. Multipoint nonparametric linkage analysis revealed highly significant linkage in the major histocompatibility complex (MHC) on chromosome 6p21 (maximum LOD score [MLS] 11.66) and suggestive linkage on chromosomes 17q23 (MLS 2.45) and 5q33 (MLS 2.18). This set of markers achieved a mean information extraction of 79.3% across the genome, with a Mendelian inconsistency rate of only 0.002%. Stratification based on carriage of the multiple sclerosis-associated DRB1*1501 allele failed to identify any other region of linkage with genomewide significance. However, ordered-subset analysis suggested that there may be an additional locus on chromosome 19p13 that acts independent of the main MHC locus. These data illustrate the substantial increase in power that can be achieved with use of the latest tools emerging from the Human Genome Project and indicate that future attempts to systematically identify susceptibility genes for multiple sclerosis will have to involve large sample sizes and an association-based methodology.

Indexed as

Genetic LinkageAustraliaChromosome MappingChromosomes, HumanEuropeFamilyGenetic MarkersGenetic Predisposition to DiseaseGenetic TestingGenomicsHumansMiddle AgedMultiple SclerosisUnited StatesGenetic Markers

Identifiers

PMID16080120
PMCPMC1226210

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.