Evidence map›Paper›PMID 16079354›Full record

ArticleMicrobiology (Reading, England)2005

Loss of topoisomerase I function affects the RpoS-dependent and GAD systems of acid resistance in Escherichia coli.

Natalee Stewart, Jingyang Feng, Xiaoping Liu, Devyani Chaudhuri, John W Foster, Marc Drolet, Yuk-Ching Tse-Dinh

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Bacterial Topoisomerase I Growth Complementation Assay.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  3. Biochemical Basis ofInternational journal of molecular sciences · 2018
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Natalee StewartDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, NY 10595, USA.
Jingyang FengDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, NY 10595, USA.
Xiaoping LiuDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, NY 10595, USA.
Devyani ChaudhuriDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, NY 10595, USA.
John W FosterDepartment of Microbiology and Immunology, University of South Alabama College of Medicine, Mobile, AL 36688, USA.
Marc DroletDépartment de Microbiologie et Immunologie, Université de Montréal, CP 6128, Succursale Centre-ville, Montréal, P. Québec, Canada H3C 3J7.
Yuk-Ching Tse-DinhDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, NY 10595, USA.
New York Medical College · USUniversité de Montréal · CAUniversity of South Alabama · US

Funding

Supplement for undergraduate research participant to promote diversityR01GM054226 · NIGMS · NEW YORK MEDICAL COLLEGE · PI TSE-DINH, YUK-CHING · 1996 to 2020
$4.6M
MECHANISMS AND CONTROL OF ACID RESISTANCE IN E COLIR01GM061147 · NIGMS · UNIVERSITY OF SOUTH ALABAMA · PI FOSTER, JOHN W · 2001 to 2004
$904k
NIGMS NIH HHS R01 GM054226NIGMS NIH HHS R01 GM061147NIGMS NIH HHS R01-GM54226NIGMS NIH HHS R01-GM61147
6 · The paper itself

Abstract

Acid resistance (AR) in Escherichia coli is important for its survival in the human gastrointestinal tract and involves three systems. The first AR system is dependent on the sigma factor RpoS. The second system (the GAD system) requires the glutamate decarboxylase isoforms encoded by the gadA and gadB genes. The third system (the ARG system) requires the arginine decarboxylase encoded by adiA. Loss of topoisomerase I function from topA deletion or Tn10 insertion mutations lowered the resistance to killing by pH 2 or 2.5 treatment by 10-fold to >100-fold. The RpoS and GAD systems were both affected by the topA mutation, but the ARG system of AR was not affected. Northern blot analysis showed that induction of gadA and gadB transcription in stationary phase and at pH 5.5 was decreased in the topA mutant. Western blot analysis showed that the topA mutation did not affect accumulation of RpoS, GadX or GadW proteins. Topoisomerase I might have a direct influence on the transcription of AR genes. This influence does not involve R-loop formation as the overexpression of RNase H did not alleviate the decrease of AR caused by the topA mutation. The effect of the topA mutation could be suppressed by an hns mutation, so topoisomerase I might be required to counteract the effect of H-NS protein on gene expression, in addition to its influence on RpoS-dependent transcription.

Indexed as

AcidsBacterial ProteinsDNA Topoisomerases, Type IDrug Resistance, MicrobialEscherichia coliFatty AcidsGene Expression Regulation, BacterialMembrane ProteinsSigma FactorTranscription, GeneticAcidsBacterial ProteinsDNA Topoisomerases, Type IFatty AcidsGadC protein, bacteriaMembrane ProteinsSigma Factorsigma factor KatF protein, Bacteria

Identifiers

PMID16079354
PMCPMC1361560
OpenAlexW2127043063

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.