Evidence map›Paper›PMID 16061254›Full record

ArticleJournal of molecular biology2005

Structural basis for recognition of the T cell adaptor protein SLP-76 by the SH3 domain of phospholipase Cgamma1.

Lu Deng, C Alejandro Velikovsky, Chittoor P Swaminathan, Sangwoo Cho, Roy A Mariuzza

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 23 citations in OpenAlex.

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  18. Keeping the (kinase) party going: SLP-76 and ITK dance to the beat.Science's STKE : signal transduction knowledge environment · 2007
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Lu DengCenter for Advanced Research in Biotechnology, W. M. Keck Laboratory for Structural Biology, University of Maryland Biotechnology Institute, Rockville, MD 20850, USA.
C Alejandro Velikovsky
Chittoor P Swaminathan
Sangwoo Cho
Roy A Mariuzza
Biotechnology Institute · USAdvanced Bioscience Laboratories (United States) · US

Funding

STRUCTURE AND FUNCTION OF T CELL ANTIGEN RECEPTORSR37AI036900 · NIAID · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI MARIUZZA, ROY A · 2000 to 2009
$3.2M
Structure-Function Study of Protein-Protein RecognitionR01GM052801 · NIGMS · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI MARIUZZA, ROY A · 1994 to 2005
$1.5M
NIAID NIH HHS R37 AI036900NIGMS NIH HHS GM052801NIGMS NIH HHS R01 GM052801
6 · The paper itself

Abstract

The enzyme phospholipase Cgamma1 (PLCgamma1) is essential for T cell signaling and activation. Following T cell receptor ligation, PLCgamma1 interacts through its SH2 and SH3 domains with the adaptors LAT and SLP-76, respectively, to form a multiprotein signaling complex that leads to activation of PLCgamma1 by Syk tyrosine kinases. To identify the binding site for PLCgamma1 in SLP-76, we used isothermal titration calorimetry to measure affinities for the interaction of PLCgamma1-SH3 with a set of overlapping peptides spanning the central proline-rich region of SLP-76. PLCgamma1-SH3 bound with high specificity to the SLP-76 motif 186PPVPPQRP193, which represents the minimal binding site. To understand the basis for selective recognition, we determined the crystal structures of PLCgamma1-SH3 in free form, and bound to a 10-mer peptide containing this site, to resolutions of 1.60 A and 1.81 A, respectively. The structures reveal that several key contacting residues of the SH3 shift toward the SLP-76 peptide upon complex formation, optimizing the fit and strengthening hydrophobic interactions. Selectivity results mainly from strict shape complementarity between protein and peptide, rather than sequence-specific hydrogen bonding. In addition, Pro193 of SLP-76 assists in positioning Arg192 into the compass pocket of PLCgamma1-SH3, which coordinates the compass residue through an unusual aspartate. The PLCgamma1-SH3/SLP-76 structure provides insights into ligand binding by SH3 domains related to PLCgamma1-SH3, as well as into recognition by PLCgamma1 of signaling partners other than SLP-76.

Indexed as

src Homology DomainsAdaptor Proteins, Signal TransducingAmino Acid SequenceBinding SitesHydrogen BondingModels, MolecularMolecular Sequence DataPeptidesPhospholipase C gammaPhosphoproteinsProtein BindingProtein Structure, SecondaryProtein Structure, TertiarySequence AlignmentType C PhospholipasesAdaptor Proteins, Signal TransducingPeptidesPhospholipase C gammaPhosphoproteinsSLP-76 signal Transducing adaptor proteinsType C Phospholipases

Identifiers

PMID16061254
PMCPMC2753203
OpenAlexW2091708111

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.