Evidence map›Paper›PMID 16059752›Full record

ArticleJournal of molecular evolution2005

Evolution of the genetic triplet code via two types of doublet codons.

Huan-Lin Wu, Stefan Bagby, Jean M H van den Elsen

Erratum issuedAbstract read
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In one paragraph

Article in Journal of molecular evolution, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Circular Tessera Codes in the Evolution of the Genetic Code.Bulletin of mathematical biology · 2020
    Article
  4. Article
  5. On the organizational dynamics of the genetic code.Genomics, proteomics & bioinformatics · 2011
    Article
  6. Article
  7. Article
  8. Review
  9. A model for the origin of protein synthesis as coreplicational scanning of nascent RNA.Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life · 2007
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Huan-Lin WuDepartment of Biology and Biochemistry, University of Bath, 4 South, Claverton Down, Bath BA2 7AY, UK.
Stefan Bagby
Jean M H van den Elsen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Explaining the apparent non-random codon distribution and the nature and number of amino acids in the 'standard' genetic code remains a challenge, despite the various hypotheses so far proposed. In this paper we propose a simple new hypothesis for code evolution involving a progression from singlet to doublet to triplet codons with a reading mechanism that moves three bases each step. We suggest that triplet codons gradually evolved from two types of ambiguous doublet codons, those in which the first two bases of each three-base window were read ('prefix' codons) and those in which the last two bases of each window were read ('suffix' codons). This hypothesis explains multiple features of the genetic code such as the origin of the pattern of four-fold degenerate and two-fold degenerate triplet codons, the origin of its error minimising properties, and why there are only 20 amino acids.

Indexed as

Evolution, MolecularGenetic CodeAmino AcidsAmino Acyl-tRNA SynthetasesCodonModels, GeneticOpen Reading FramesAmino AcidsAmino Acyl-tRNA SynthetasesCodon

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.