Evidence map›Paper›PMID 16055745›Full record

ArticleMolecular and cellular biology2005

Dual activators of the sterol biosynthetic pathway of Saccharomyces cerevisiae: similar activation/regulatory domains but different response mechanisms.

Brandon S J Davies, Helen S Wang, Jasper Rine

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 132 citations in OpenAlex.

  1. Article
  2. mSphere · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Combinatorial metabolic engineering ofEngineering microbiology · 2023
    Article
  7. Article
  8. Article
  9. Azole-Resistant Alleles ofAntimicrobial agents and chemotherapy · 2022
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Antibiotics (Basel, Switzerland) · 2020
    Review
  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Brandon S J DaviesDepartment of Molecular and Cell Biology, University of California at Berkeley, 94720-3202, USA.
Helen S Wang
Jasper Rine
University of California, Berkeley · US

Funding

THE MOLECULAR BASIS OF CELL FUNCTIONT32GM007232 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BILDER, DAVID, UNAL, ELCIN · 1985 to 2022
$36.4M
REGULATION OF THE STEROL BIOSYNTHETIC PATHWAY IN YEASTR01GM035827 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RINE, JASPER D · 1986 to 2005
$2.0M
STUDIES OF ENVIRONMENTAL MUTAGENS AND CARCINOGENST32ES007075 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BJELDANES, LEONARD F · 1985 to 2004
$865k
NIEHS NIH HHS T32 ES007075NIEHS NIH HHS T32 ES07075NIGMS NIH HHS 5 T32 GM07232NIGMS NIH HHS R01 GM035827NIGMS NIH HHS T32 GM007232
6 · The paper itself

Abstract

Genes encoding biosynthetic enzymes that make ergosterol, the major fungal membrane sterol, are regulated, in part, at the transcriptional level. Two transcription factors, Upc2p and Ecm22p, bind to the promoters of most ergosterol biosynthetic (ERG) genes, including ERG2 and ERG3, and activate these genes upon sterol depletion. We have identified the transcriptional activation domains of Upc2p and Ecm22p and found that UPC2-1, a mutation that allows cells to take up sterols aerobically, increased the potency of the activation domain. The equivalent mutation in ECM22 also greatly enhanced transcriptional activation. The C-terminal regions of Upc2p and Ecm22p, which contained activation domains, also conferred regulation in response to sterol levels. Hence, the activation and regulatory domains of these proteins overlapped. However, the two proteins differed markedly in how they respond to an increased need for sterols. Upon inducing conditions, Upc2p levels increased, and chromatin immunoprecipitation experiments revealed more Upc2p at promoters even when the activation/regulatory domains were tethered to a different DNA-binding domain. However, induction resulted in decreased Ecm22p levels and a corresponding decrease in the amount of Ecm22p bound to promoters. Thus, these two activators differ in their contributions to the regulation of their targets.

Indexed as

beta-GalactosidaseChromatin ImmunoprecipitationDNAErgosterolGenes, ReporterLac OperonModels, BiologicalModels, ChemicalModels, GeneticPlasmidsProtein BindingProtein Structure, TertiaryRecombinant Fusion ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSterolsbeta-GalactosidaseDNAECM22 protein, S cerevisiaeErgosterolRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsSterolsTrans-ActivatorsTranscription FactorsUPC2 protein, S cerevisiae

Identifiers

PMID16055745
PMCPMC1190251
OpenAlexW2110895138

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.