Evidence map›Paper›PMID 16055739›Full record

ArticleMolecular and cellular biology2005

Trypanosomal TBP functions with the multisubunit transcription factor tSNAP to direct spliced-leader RNA gene expression.

Anish Das, Qing Zhang, Jennifer B Palenchar, Bithi Chatterjee, George A M Cross, Vivian Bellofatto

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 76 citations in OpenAlex.

  1. A systematic analysis ofGenome research · 2021
    Article
  2. Review
  3. Article
  4. Transcription Factor Analysis in Trypanosomatids.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
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  11. Review
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  14. TRF2 and the evolution of the bilateria.Genes & development · 2014
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Anish DasDepartment of Microbiology and Molecular Genetics, University of Medicine and Dentistry of New Jersey-New Jersey Medical School, Newark, 07103, USA.
Qing Zhang
Jennifer B Palenchar
Bithi Chatterjee
George A M Cross
Vivian Bellofatto
Rutgers, The State University of New Jersey · USBioinformatics Institute · RU

Funding

MOLECULAR GENETICS OF TRYPANOSOME ANTIGENIC VARIATIONR01AI021729 · NIAID · ROCKEFELLER UNIVERSITY · PI CROSS, GEORGE ALAN MARTIN · 1985 to 2011
$5.3M
TRYPANOSOME MRNA SYNTHESIS BY GENE TRANSFERR01AI029478 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI BELLOFATTO, VIVIAN · 1991 to 2010
$4.6M
MOLECULAR GENETICS OF TRYPANOSOME ANTIGENIC VARIATIONR37AI021729 · NIAID · ROCKEFELLER UNIVERSITY · PI CROSS, GEORGE ALAN MARTIN · 1988 to 1997
–
NIAID NIH HHS AI21729NIAID NIH HHS AI29478NIAID NIH HHS R01 AI021729NIAID NIH HHS R01 AI029478
6 · The paper itself

Abstract

Protein-coding genes of trypanosomes are mainly transcribed polycistronically and cleaved into functional mRNAs in a process that requires trans splicing of a capped 39-nucleotide RNA derived from a short transcript, the spliced-leader (SL) RNA. SL RNA genes are individually transcribed from the only identified trypanosome RNA polymerase II promoter. We have purified and characterized a sequence-specific SL RNA promoter-binding complex, tSNAP(c), from the pathogenic parasite Trypanosoma brucei, which induces robust transcriptional activity within the SL RNA gene. Two tSNAP(c) subunits resemble essential components of the metazoan transcription factor SNAP(c), which directs small nuclear RNA transcription. A third subunit is unrelated to any eukaryotic protein and identifies tSNAP(c) as a unique trypanosomal transcription factor. Intriguingly, the unusual trypanosome TATA-binding protein (TBP) tightly associates with tSNAPc and is essential for SL RNA gene transcription. These findings provide the first view of the architecture of a transcriptional complex that assembles at an RNA polymerase II-dependent gene promoter in a highly divergent eukaryote.

Indexed as

RNA, Spliced LeaderAmino Acid SequenceAnimalsBase SequenceBlotting, WesternCell NucleusChromatographyDNAElectrophoresis, Polyacrylamide GelImmunoglobulin GImmunoprecipitationIn Vitro TechniquesModels, GeneticMolecular Sequence DataOpen Reading FramesPeptidesDNAImmunoglobulin GPeptidesRNARNA Polymerase IIRNA, Spliced LeaderSNAPC protein complex, humanTATA-Box Binding ProteinTranscription Factors

Identifiers

PMID16055739
PMCPMC1190245
OpenAlexW2169615432

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.