Evidence map›Paper›PMID 16055708›Full record

ArticleMolecular and cellular biology2005

Fen-1 facilitates homologous recombination by removing divergent sequences at DNA break ends.

Koji Kikuchi, Yoshihito Taniguchi, Atsushi Hatanaka, Eiichiro Sonoda, Helfrid Hochegger, Noritaka Adachi, Yasuo Matsuzaki, Hideki Koyama, Dik C van Gent, Maria Jasin and 1 more

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. RAD18- and BRCA1-dependent pathways promote cellular tolerance to the nucleoside analog ganciclovir.Genes to cells : devoted to molecular & cellular mechanisms · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Koji KikuchiDepartment of Radiation Genetics, Graduate School of Medicine, Kyoto University, Yoshidakonoe, Sakyo-ku, Japan.
Yoshihito Taniguchi
Atsushi Hatanaka
Eiichiro Sonoda
Helfrid Hochegger
Noritaka Adachi
Yasuo Matsuzaki
Hideki Koyama
Dik C van Gent
Maria Jasin
Shunichi Takeda
Japan Science and Technology Agency · JPKyoto University · JPKihara Institute for Biological Research · JPErasmus MC · NLMemorial Sloan Kettering Cancer Center · USYokohama City University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Homologous recombination (HR) requires nuclease activities at multiple steps, but the contribution of individual nucleases to the processing of double-strand DNA ends at different stages of HR has not been clearly defined. We used chicken DT40 cells to investigate the role of flap endonuclease 1 (Fen-1) in HR. FEN-1-deficient cells exhibited a significant decrease in the efficiency of immunoglobulin gene conversion while being proficient in recombination between sister chromatids, suggesting that Fen-1 may play a role in HR between sequences of considerable divergence. To clarify whether sequence divergence at DNA ends is truly the reason for the observed HR defect in FEN-1(-/-) cells we inserted a unique I-SceI restriction site in the genome and tested various donor and recipient HR substrates. We found that the efficiency of HR-mediated DNA repair was indeed greatly diminished when divergent sequences were present at the DNA break site. We conclude that Fen-1 eliminates heterologous sequences at DNA damage site and facilitates DNA repair by HR.

Indexed as

DNA DamageRecombination, GeneticAnimalsBase SequenceCell CycleChickensDeoxyribonucleases, Type II Site-SpecificDNADNA, ComplementaryDNA RepairFlap EndonucleasesFlow CytometryGamma RaysKineticsModels, GeneticMolecular Sequence DataDeoxyribonucleases, Type II Site-SpecificDNADNA, ComplementaryFlap EndonucleasesSaccharomyces cerevisiae ProteinsSCEI protein, S cerevisiae

Identifiers

PMID16055708
PMCPMC1190240
OpenAlexW2167855709

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.