Evidence map›Paper›PMID 16054586›Full record

ArticleArchives of biochemistry and biophysics2005

Spectroscopic characterization of the EF-hand domain of phospholipase C delta1: identification of a lipid interacting domain.

Minae Kobayashi, Zygmunt Gryczynski, Joanna Lukomska, Jianwen Feng, Mary F Roberts, Joseph R Lakowicz, Jon W Lomasney

Open access · greenAbstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Minae KobayashiDepartment of Pathology, Northwestern University, The Feinberg School of Medicine, 303 East Chicago Ave, Chicago, IL 60611, USA.
Zygmunt Gryczynski
Joanna Lukomska
Jianwen Feng
Mary F Roberts
Joseph R Lakowicz
Jon W Lomasney
University of Maryland, Baltimore · USBoston College · USNorthwestern University · US

Funding

WHO'S WHO IN FLUORESCENCEP41RR008119 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI BASKAKOV, ILIA V · 1993 to 2006
$7.4M
ACTIVATION OF PI-SPECIFIC PHOSPHOLIPASE C ENZYMESR01GM060418 · NIGMS · BOSTON COLLEGE · PI ROBERTS, MARY FEDARKO · 2000 to 2013
$3.1M
Molecular Basis for Protein-Phospholipid InteractionR01HL055591 · NHLBI · NORTHWESTERN UNIVERSITY · PI LOMASNEY, JON W · 2002 to 2005
$1.2M
MOLECULAR BASIS FOR PROTEIN/PHOSPHOLIPID INTERACTIONR29HL055591 · NHLBI · NORTHWESTERN UNIVERSITY · PI LOMASNEY, JON W · 1996 to 2000
$49k
NCRR NIH HHS P41 RR008119NHLBI NIH HHS HL03961NHLBI NIH HHS HL55591NHLBI NIH HHS R01 HL055591NHLBI NIH HHS R29 HL055591NIGMS NIH HHS GM60418NIGMS NIH HHS R01 GM060418
6 · The paper itself

Abstract

The interaction of the isolated EF-hand domain of phospholipase C delta1 with arachidonic acid (AA) was characterized using circular dichroism (CD) and fluorescence spectroscopy. The far-UV CD spectral changes indicate that AA binds to the EF domain. The near-UV CD spectra suggest that the orientations of aromatic residues in the peptide are affected when AA binds to the protein. The fluorescence of the single intrinsic tryptophan located in EF1 was enhanced by the addition of dodecylmaltoside (DDM) and AA suggesting that this region of the protein is involved in hydrophobic interactions. In the presence of a low concentration of DDM it was found that AA induced a change in fluorescence resonance energy transfer, which is indicative of a conformational change. The lipid induced conformational change may play a role in calcium binding because the isolated EF-hand domain did not bind Ca2+ in the absence of lipids, but Ca2+-dependent changes in the intrinsic tryptophan emission were observed when free fatty acids were present. These studies identify specific EF-hand domains as allosteric regulatory domains that require hydrophobic ligands such as lipids.

Indexed as

Lipid MetabolismAmino Acid SequenceArachidonic AcidBinding SitesCalciumCircular DichroismEF Hand MotifsEnzyme ActivationGlucosidesHydrophobic and Hydrophilic InteractionsIsoenzymesLigandsLipidsMolecular ConformationMolecular Sequence DataPhospholipase C deltaArachidonic AcidCalciumdodecyl maltosideGlucosidesIsoenzymesLigandsLipidsPhospholipase C deltaTryptophanType C Phospholipases

Identifiers

PMID16054586
PMCPMC6814010
OpenAlexW2040953780

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.