Evidence map›Paper›PMID 16051809›Full record

ArticleJournal of virology2005

Identification of an essential molecular contact point on the duck hepatitis B virus reverse transcriptase.

Feng Cao, Matthew P Badtke, Lisa M Metzger, Ermei Yao, Babatunde Adeyemo, Yunhao Gong, John E Tavis

Abstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Hepadnavirus Genome Replication and Persistence.Cold Spring Harbor perspectives in medicine · 2015
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Hepatitis B virus replication.World journal of gastroenterology · 2007
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Feng CaoDepartment of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, 1402 S. Grand Blvd., St. Louis, MO 63104, USA.
Matthew P Badtke
Lisa M Metzger
Ermei Yao
Babatunde Adeyemo
Yunhao Gong
John E Tavis
Saint Louis University · US

Funding

Analysis of the hepadnaviral reverse transcriptaseR01AI038447 · NIAID · SAINT LOUIS UNIVERSITY · PI TAVIS, JOHN E · 2002 to 2006
$1.3M
HEPADNAVIRAL REVERSE TRANSCRIPTIONR29AI038447 · NIAID · SAINT LOUIS UNIVERSITY · PI TAVIS, JOHN E · 1996 to 2000
$111k
NIAID NIH HHS AI38447NIAID NIH HHS R01 AI038447NIAID NIH HHS R29 AI038447
6 · The paper itself

Abstract

The hepadnaviral polymerase (P) functions in a complex with viral nucleic acids and cellular chaperones. To begin to identify contacts between P and its partners, we assessed the exposure of the epitopes of six monoclonal antibodies (MAbs) to the terminal protein domain of the duck hepatitis B virus P protein in a partially denaturing buffer (RIPA) and a physiological buffer (IPP150). All MAbs immunoprecipitated in vitro translated P well in RIPA, but three immunoprecipitated P poorly in IPP150. Therefore, the epitopes for these MAbs were obscured in the native conformation of P but were exposed when P was in RIPA. Epitopes for MAbs that immunoprecipitated P poorly in IPP150 were between amino acids (aa) 138 and 202. Mutation of a highly conserved motif within this region (T3; aa 176 to 183) improved the immunoprecipitation of P by these MAbs and simultaneously inhibited DNA priming by P. Peptides containing the T3 motif inhibited DNA priming in a dose-dependent manner, whereas eight irrelevant peptides did not. T3 function appears to be conserved among the hepadnaviruses because mutating T3 ablated DNA synthesis in both duck hepatitis B virus and hepatitis B virus. These results indicate that (i) the conserved T3 motif is a molecular contact point whose ligand can be competed by soluble T3 peptides, (ii) the occupancy of T3 obscures the epitopes for three MAbs, and (iii) proper occupancy of T3 by its ligand is essential for DNA priming. Therefore, small-molecule ligands that compete for binding to T3 with its natural ligand could form a novel class of antiviral drugs.

Indexed as

Amino Acid SequenceAntibodies, MonoclonalBinding SitesDNAEpitopesHepatitis B Virus, DuckMolecular Sequence DataRNA-Directed DNA PolymeraseAntibodies, MonoclonalDNAEpitopesRNA-Directed DNA Polymerase

Identifiers

PMID16051809
PMCPMC1182640
OpenAlexW2015776048

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.